Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00577X
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   1.3  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.2  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    26   2.9  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   3.9  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   5.1  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   9.0  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   9.0  

>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 312 PTGFPSCLWTTATLPVTSEMTASKLLPSARGQSLSGALQTS 434
           PT FPS   +T  +P T+  T+SK++ +    S+S   Q+S
Sbjct: 402 PTSFPSLTSSTKKIPSTTLPTSSKMITTTT-PSVSNNTQSS 441


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +3

Query: 18  TSSSPSQVKTXXXXXXXXXXXXDYDTNEDLLYPYSPTPYFG 140
           T++SP   ++            +YD+    +YPY P P+ G
Sbjct: 448 TANSPIAYQSYSVMPTYWSFPQNYDSTVPAVYPYMPPPFSG 488


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 282 VRATARESKYPTGFPSCLWTTATLPVTSEMTASKLLPSARGQSLSGALQTSPGSST 449
           +R  ++ S  PT FP  L+  +T+ +   +   K++P    + L   L +SP S T
Sbjct: 113 LRFVSQPSICPTDFPLKLFFLSTVGIELLIVNEKIIPQKTQKYLLYELFSSPSSIT 168


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +2

Query: 293 SKGKQIPNRIPVVSMDDSDTSSYIRDDSVKTVTISTGPI 409
           S G ++PN    +S ++ +  + +++DS K    ++ PI
Sbjct: 35  SSGSELPNFKTTISQNNEEVKTSLKEDSSKFHPSASAPI 73


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +3

Query: 243 PQSYM*TNSLRSSVRATARESKYPTG-FPSCLWTTATLPVTSEMTASKLLPSARGQSLSG 419
           P+  + T S  S+V  +   S   T  +PS   +  T  ++S    S    S+  +S S 
Sbjct: 583 PEETISTVSTTSTVSESGSSSASITSTYPSSTLSMTTSHLSSSSVHSSSAHSSSSRSSSM 642

Query: 420 ALQTSPGSST 449
           +L  S GSST
Sbjct: 643 SLPPSAGSST 652


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 390 PSARGQSLSGALQTSPGSSTRP 455
           PS+ G SL+ + QTS  SST P
Sbjct: 29  PSSYGSSLNVSEQTSGSSSTSP 50


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +3

Query: 342  TATLPVTSEMTASKLLPSARGQSLSGALQTSPGSSTRPKL 461
            T T PVTS+ TASK          S A +   G S   +L
Sbjct: 1720 TETKPVTSKPTASKADVGQNATEASSAKREPSGKSLSARL 1759


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,076,838
Number of Sequences: 5004
Number of extensions: 42888
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)