Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00577X
         (519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_19746| Best HMM Match : Calx-beta (HMM E-Value=0.026)               29   1.7  
SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_9711| Best HMM Match : EGF (HMM E-Value=2.4e-08)                    29   3.0  
SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_14513| Best HMM Match : rve (HMM E-Value=0.14)                      28   4.0  
SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)     28   5.3  
SB_31775| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_35934| Best HMM Match : HC2 (HMM E-Value=4.4)                       27   9.3  
SB_13438| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)                 27   9.3  
SB_10730| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)                 27   9.3  
SB_50256| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)               27   9.3  

>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +2

Query: 260  NEQFALVSKGHSKGKQIPNRIPVV---SMDDSDTSSYIRDDSVKTVTISTGPITKRCAAD 430
            NE   L    +    ++P R+P++   S++DS++ + +      TVTIST   T     D
Sbjct: 5577 NEPIILEVSFNEGDTEVPVRVPIINDASLEDSESFTVVLSSDDPTVTISTDTATVNINDD 5636

Query: 431  VARI 442
             A I
Sbjct: 5637 DAVI 5640


>SB_19746| Best HMM Match : Calx-beta (HMM E-Value=0.026)
          Length = 414

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 21/77 (27%), Positives = 36/77 (46%)
 Frame = +3

Query: 123 PTPYFGMYHLVKIPIGRGLLHHVDYWGEGKVTNLGKIRGFPQSYM*TNSLRSSVRATARE 302
           PT Y+  + L+ IP   G  H   YW   ++ ++ +  G P  Y  ++ L    +A    
Sbjct: 208 PTGYWTSHRLLDIPQAIG--HPTGYWTSHRLLDIPQAIGHPTGYWTSDRLLDIPQAI--- 262

Query: 303 SKYPTGFPSCLWTTATL 353
            ++PTG+    WT+  L
Sbjct: 263 -RHPTGY----WTSHRL 274



 Score = 28.7 bits (61), Expect = 3.0
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +3

Query: 123 PTPYFGMYHLVKIPIGRGLLHHVDYWGEGKVTNLGKIRGFPQSYM*TNSLRSSVRATARE 302
           PT Y+  + L+ IP   G  H   YW   ++ ++ +  G P  Y  ++ L    +A    
Sbjct: 75  PTGYWTSHRLLDIPQAIG--HPTGYWTSHRLLDIPQAIGHPTGYWTSHRLLDIPQAIG-- 130

Query: 303 SKYPTGFPSCLWTTATL 353
             +PTG+    WT+  L
Sbjct: 131 --HPTGY----WTSHRL 141



 Score = 28.7 bits (61), Expect = 3.0
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +3

Query: 123 PTPYFGMYHLVKIPIGRGLLHHVDYWGEGKVTNLGKIRGFPQSYM*TNSLRSSVRATARE 302
           PT Y+  + L+ IP   G  H   YW   ++ ++ +  G P  Y  ++ L    +A    
Sbjct: 94  PTGYWTSHRLLDIPQAIG--HPTGYWTSHRLLDIPQAIGHPTGYWTSHRLLDIPQAIG-- 149

Query: 303 SKYPTGFPSCLWTTATL 353
             +PTG+    WT+  L
Sbjct: 150 --HPTGY----WTSHRL 160



 Score = 28.7 bits (61), Expect = 3.0
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +3

Query: 123 PTPYFGMYHLVKIPIGRGLLHHVDYWGEGKVTNLGKIRGFPQSYM*TNSLRSSVRATARE 302
           PT Y+  + L+ IP   G  H   YW   ++ ++ +  G P  Y  ++ L    +A    
Sbjct: 113 PTGYWTSHRLLDIPQAIG--HPTGYWTSHRLLDIPQAIGHPTGYWTSHRLLDIPQAIG-- 168

Query: 303 SKYPTGFPSCLWTTATL 353
             +PTG+    WT+  L
Sbjct: 169 --HPTGY----WTSHRL 179



 Score = 28.7 bits (61), Expect = 3.0
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +3

Query: 123 PTPYFGMYHLVKIPIGRGLLHHVDYWGEGKVTNLGKIRGFPQSYM*TNSLRSSVRATARE 302
           PT Y+  + L+ IP   G  H   YW   ++ ++ +  G P  Y  ++ L    +A    
Sbjct: 132 PTGYWTSHRLLDIPQAIG--HPTGYWTSHRLLDIPQAIGHPTGYWTSHRLLDIPQAIG-- 187

Query: 303 SKYPTGFPSCLWTTATL 353
             +PTG+    WT+  L
Sbjct: 188 --HPTGY----WTSHRL 198



 Score = 28.7 bits (61), Expect = 3.0
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +3

Query: 123 PTPYFGMYHLVKIPIGRGLLHHVDYWGEGKVTNLGKIRGFPQSYM*TNSLRSSVRATARE 302
           PT Y+  + L+ IP   G  H   YW   ++ ++ +  G P  Y  ++ L    +A    
Sbjct: 151 PTGYWTSHRLLDIPQAIG--HPTGYWTSHRLLDIPQAIGHPTGYWTSHRLLDIPQAIG-- 206

Query: 303 SKYPTGFPSCLWTTATL 353
             +PTG+    WT+  L
Sbjct: 207 --HPTGY----WTSHRL 217



 Score = 28.7 bits (61), Expect = 3.0
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +3

Query: 123 PTPYFGMYHLVKIPIGRGLLHHVDYWGEGKVTNLGKIRGFPQSYM*TNSLRSSVRATARE 302
           PT Y+  + L+ IP   G  H   YW   ++ ++ +  G P  Y  ++ L    +A    
Sbjct: 170 PTGYWTSHRLLDIPQAIG--HPTGYWTSHRLLDIPQAIGHPTGYWTSHRLLDIPQAIG-- 225

Query: 303 SKYPTGFPSCLWTTATL 353
             +PTG+    WT+  L
Sbjct: 226 --HPTGY----WTSHRL 236



 Score = 28.7 bits (61), Expect = 3.0
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +3

Query: 123 PTPYFGMYHLVKIPIGRGLLHHVDYWGEGKVTNLGKIRGFPQSYM*TNSLRSSVRATARE 302
           PT Y+  + L+ IP   G  H   YW   ++ ++ +  G P  Y  ++ L    +A    
Sbjct: 189 PTGYWTSHRLLDIPQAIG--HPTGYWTSHRLLDIPQAIGHPTGYWTSHRLLDIPQAIG-- 244

Query: 303 SKYPTGFPSCLWTTATL 353
             +PTG+    WT+  L
Sbjct: 245 --HPTGY----WTSDRL 255


>SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +3

Query: 156 KIPIGRGLLHHVDYWGEGKVTNLGKIRGFPQSYM---*TNSLRSSVRATARESKYP 314
           ++P GR    HV    EG++ NLG   G P   M    TN + + +    R  KYP
Sbjct: 331 ELPNGR----HVVLLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTRHEKYP 382


>SB_9711| Best HMM Match : EGF (HMM E-Value=2.4e-08)
          Length = 245

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +3

Query: 123 PTPYFGMYHLVKIPIGRGLLHHVDYWGEGKVTNLGKIRGFPQSYM*TNSLRSSVRATARE 302
           PT Y+  + L+ IP   G  H   YW   ++ ++ +  G P  Y  ++ L    +A    
Sbjct: 147 PTGYWTSHRLLDIPQAIG--HPTGYWTSHRLLDIPQAIGHPTGYWTSHRLLDIPQAIG-- 202

Query: 303 SKYPTGFPSCLWTTATL 353
             +PTG+    WT+  L
Sbjct: 203 --HPTGY----WTSDRL 213



 Score = 28.7 bits (61), Expect = 3.0
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +3

Query: 123 PTPYFGMYHLVKIPIGRGLLHHVDYWGEGKVTNLGKIRGFPQSYM*TNSLRSSVRATARE 302
           PT Y+  + L+ IP   G  H   YW   ++ ++ +  G P  Y  ++ L    +A    
Sbjct: 166 PTGYWTSHRLLDIPQAIG--HPTGYWTSHRLLDIPQAIGHPTGYWTSDRLLDIPQAIG-- 221

Query: 303 SKYPTGFPSCLWTTATL 353
             +PTG+    WT+  L
Sbjct: 222 --HPTGY----WTSHRL 232



 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +3

Query: 123 PTPYFGMYHLVKIPIGRGLLHHVDYWGEGKVTNLGKIRGFPQSYM*TNSLRSSVRATARE 302
           PT Y+  + L+ IP   G  H   YW   ++ ++ +  G P  Y  ++ L    +A    
Sbjct: 185 PTGYWTSHRLLDIPQAIG--HPTGYWTSDRLLDIPQAIGHPTGYWTSHRLLDIPQAIG-- 240

Query: 303 SKYPTGF 323
             +PTG+
Sbjct: 241 --HPTGY 245


>SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 348 TLPVTSEMTASKLLPSARGQSLSGALQTSPGSSTRPKLVVAYGYSDNS 491
           T P+T   T     P + G+S SGA+++S  SS   K V A  +  +S
Sbjct: 295 TNPLTLRNTVDSSSPVSGGRSYSGAIKSSLSSSVNSKPVEATSHVADS 342


>SB_14513| Best HMM Match : rve (HMM E-Value=0.14)
          Length = 1101

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 49  RQRKNGKPPLSQTTTQMRTCC 111
           ++RK   P LSQ+ TQ+ +CC
Sbjct: 787 KRRKTPAPALSQSATQLASCC 807


>SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)
          Length = 480

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 102 PHLCRSLAQRRLPILPLTVFLPVK 31
           P +CRS+     P +P++V+LP++
Sbjct: 118 PSICRSVYLSAYPSVPMSVYLPIR 141


>SB_31775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 551

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +3

Query: 276 SSVRATARESKYPTGFPSCLWTTATLPVTSEMTASKLLPS 395
           S++  +A  +K  TG P+C WT+ +  V +  T++ ++PS
Sbjct: 473 SAILDSATVAKLGTG-PTCSWTSKSTLVITTGTSATIMPS 511


>SB_35934| Best HMM Match : HC2 (HMM E-Value=4.4)
          Length = 181

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 67  KPPLSQTTTQMRTCCIRTPQHPTSVCTTS*RSRL 168
           +PP+  TT   +TC  R+P   T+V + +   RL
Sbjct: 48  RPPVQHTTVSSQTCTKRSPVQHTTVYSQTCIKRL 81


>SB_13438| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)
          Length = 672

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = -2

Query: 278 RAQTVRLHVALREASYLAKVSHFSFSPVIDVV*QPSTNRDLHEVVHTEVGCWGVRIQQ 105
           +A  +  H+++R  + +  +SH +  PVI  V   +  +   ++ HT +   G+R Q+
Sbjct: 269 KATGLGAHMSIRHVNNIFMISHGALHPVIYFVFNENFRKKFRQLTHTWL-TRGIRFQR 325


>SB_10730| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)
          Length = 654

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = -2

Query: 278 RAQTVRLHVALREASYLAKVSHFSFSPVIDVV*QPSTNRDLHEVVHTEVGCWGVRIQQ 105
           +A  +  H+++R  + +  +SH +  PVI  V   +  +   ++ HT +   G+R Q+
Sbjct: 254 KATGLGAHMSIRHVNNIFMISHGALHPVIYFVFNENFRKKFRQLTHTWL-TRGIRFQR 310


>SB_50256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 67  KPPLSQTTTQMRTCCIRTPQHPTSVCTTS*RSRL 168
           +PP+  TT   +TC  R+P   T+V + +   RL
Sbjct: 48  RPPVQHTTVSSQTCTKRSPVQHTTVYSQTCIKRL 81


>SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)
          Length = 1737

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -2

Query: 254  VALREASYLAKVSHFSFSPVIDVV*QPSTNRDLHEVVHTEVGCWGVRIQQVLICV 90
            V  +++SY     HF  S +++V+   S N  +      ++ C  +RI  VL+C+
Sbjct: 1336 VLFKDSSYQQTALHFLASSLLEVMENMSKNEHIRLTFQKDMLCECIRI--VLVCL 1388


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,184,009
Number of Sequences: 59808
Number of extensions: 355974
Number of successful extensions: 953
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)