Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00577X
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom...    29   2.6  
AC024809-1|AAF59542.4|  519|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    27   6.1  

>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
           homolog) family protein 6 protein.
          Length = 1186

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 354 PVTSEMTASKLLPSARGQSLSGALQTSPGSSTRPKLVVAYGYSDNSDD 497
           P  S  +  K+L  +  +++S  ++T   +S RPK+VV        DD
Sbjct: 41  PKISNDSEKKVLKRSNSKTVSSPVKTPRNASKRPKVVVCSSSEGEDDD 88


>AC024809-1|AAF59542.4|  519|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.7a protein.
          Length = 519

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 324 GILLGICFPLLWPLLTSANCSFTCSFEG 241
           GI   I FP LWP L + + + + SF G
Sbjct: 59  GIQFSIFFPTLWPFLNTVDPTASASFFG 86


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical protein
            C29A12.4 protein.
          Length = 1560

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
 Frame = -3

Query: 445  DDPGDVCSAPLSDWPRADGNSFD----AVISDVTGSVAVVHRH-DGNPV 314
            D   D C+ PL   P  +GN ++    AVI++  G+ A + R+ +GN V
Sbjct: 1501 DRSNDSCTQPLLAKPHINGNGYEPLKGAVIANGNGATATMMRNGNGNGV 1549


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,615,243
Number of Sequences: 27780
Number of extensions: 247494
Number of successful extensions: 705
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)