Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00577X
         (519 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15690.2 68416.m01989 biotin carboxyl carrier protein of acet...    32   0.27 
At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-contain...    30   0.81 
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro...    30   1.1  
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ...    28   3.3  
At1g08760.1 68414.m00975 expressed protein similar to At1g21030,...    28   3.3  
At3g44730.1 68416.m04814 kinesin motor protein-related similar t...    28   4.3  
At1g79600.1 68414.m09281 ABC1 family protein contains Pfam domai...    27   5.7  
At5g37310.1 68418.m04481 endomembrane protein 70, putative multi...    27   7.6  
At2g23190.1 68415.m02770 cytochrome P450, putative Similar to  C...    27   7.6  
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ...    27   7.6  
At1g26890.1 68414.m03279 hypothetical protein                          27   7.6  

>At3g15690.2 68416.m01989 biotin carboxyl carrier protein of
           acetyl-CoA carboxylase-related contains weak similarity
           to Biotin carboxyl carrier protein of acetyl-CoA
           carboxylase, chloroplast precursor (BCCP)
           (Swiss-Prot:Q42533) [Arabidopsis thaliana]
          Length = 263

 Score = 31.9 bits (69), Expect = 0.27
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -3

Query: 367 SDVTGSVAVVHRHDGNPVGY---LLSLAVALTDERKL 266
           SDVTG V  + R DG PVGY   L+S+  +    +KL
Sbjct: 226 SDVTGEVVKILREDGEPVGYNDALISILPSFPGIKKL 262


>At1g52670.1 68414.m05947 biotin/lipoyl attachment domain-containing
           protein similar to SP|Q06881 Biotin carboxyl carrier
           protein of acetyl-CoA carboxylase (BCCP) {Anabaena sp.};
           contains Pfam profile PF00364: Biotin-requiring enzyme
          Length = 274

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 373 VISDVTGSVAVVHRHDGNPVGYLLSLAVAL 284
           V SDV+G +  + R DG PVGY  +L   L
Sbjct: 235 VESDVSGEIVKILREDGEPVGYNDALITVL 264


>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
           protein GI:1279562 from [Medicago sativa]
          Length = 557

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +2

Query: 233 KRLPSKLHVNEQFALVSKGHSKGKQIPNRIPVVSMDDSDTSSYIRDDSV--KTVTISTGP 406
           K++P K+  ++     S+   K K++P +    S D+S   S   D+    K V  + G 
Sbjct: 55  KKVPKKVESSDDSDSESEEEEKAKKVPAKKAASSSDESSDDSSSDDEPAPKKAVAATNGT 114

Query: 407 ITKRCAAD 430
           + K+   D
Sbjct: 115 VAKKSKDD 122


>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein ACBF GB:U90212 GI:1899187
           from [Nicotiana tabacum]
          Length = 445

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 93  TNEDLLYPYSPTPYFGMYHLVKIPIGRG 176
           T EDL+ P+S    FG    VKIP+G+G
Sbjct: 339 TEEDLMQPFSD---FGEVVSVKIPVGKG 363


>At1g08760.1 68414.m00975 expressed protein similar to At1g21030,
           At5g44890, At2g29240, At1g08740; similar to EST
           gb|N96641
          Length = 748

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +2

Query: 173 RAATP--RRLLGRRKSD*PWQDKRLPSKLHVNEQFALVSKGHSKGKQIPNRIPVVSMDDS 346
           R  TP  R L   R+S      ++LPSK      FA  SK H+K +      P   +D  
Sbjct: 319 RDLTPDSRSLAAPRRST---SSEKLPSKQERANVFARSSKEHNKIQSTKKVEPTAVLDTK 375

Query: 347 DTSSYIRDDSVKTVTIS 397
           D +S  +  SV+  +++
Sbjct: 376 DKTSRPKSTSVEKKSVA 392


>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
            other kinesin-like proteins of A. thaliana: F02P16.12
            (PID:g2191180), katA (D11371), katB (D21137), and katC
            (D21138); contains non-consensus AT-AC splice sites at
            intron 10
          Length = 1087

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 25/90 (27%), Positives = 37/90 (41%)
 Frame = +3

Query: 186  HVDYWGEGKVTNLGKIRGFPQSYM*TNSLRSSVRATARESKYPTGFPSCLWTTATLPVTS 365
            H+   G G  T   K    PQ    T S  +   +T ++ K  +GFPS L      P   
Sbjct: 764  HLPRTGNGAGT---KAEASPQPNDGTRSYETRSCSTGKQRK--SGFPSALRNREASPRMP 818

Query: 366  EMTASKLLPSARGQSLSGALQTSPGSSTRP 455
             +   +L PS   +SLS    ++  S  +P
Sbjct: 819  NLAEERLNPSPSRRSLSTDRASTIKSRNKP 848


>At1g79600.1 68414.m09281 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 711

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 432 SPGSSTRPKLVVAYGYSDNSDDIQ 503
           SP  S+RP  VV Y  +D +DD+Q
Sbjct: 58  SPSPSSRPASVVQYRRADLADDLQ 81


>At5g37310.1 68418.m04481 endomembrane protein 70, putative
           multispanning membrane protein, Homo sapiens,
           EMBL:HSU94831
          Length = 564

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 273 RSSVRATARESKYPTGFPSCLWTTATLPVTSEMTASKLLP 392
           +S  +A  R +KYP   P   W   TLP   +M  +  LP
Sbjct: 425 KSEFQAPCRTTKYPREIPPMRWYRRTLP---QMAMAGFLP 461


>At2g23190.1 68415.m02770 cytochrome P450, putative Similar to
           Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis thaliana];
          Length = 543

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 114 PYSPTPYFGMYHLVKIPIGRGLLHHVDYWGEGKVTNL 224
           P  P P+ G  HL+K P+ R  L      G+  + +L
Sbjct: 79  PARPLPFIGHLHLLKQPLHRTFLSFSQSLGDAPIFSL 115


>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 434

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 93  TNEDLLYPYSPTPYFGMYHLVKIPIGRG 176
           T+EDL  P+S    FG    VKIP+G+G
Sbjct: 318 TDEDLKQPFSE---FGEIVSVKIPVGKG 342


>At1g26890.1 68414.m03279 hypothetical protein
          Length = 280

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 312 PTGFPSCLWTTATL 353
           PTGFP CL+T  TL
Sbjct: 73  PTGFPKCLYTCNTL 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,091,957
Number of Sequences: 28952
Number of extensions: 237039
Number of successful extensions: 715
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)