Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00576
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 100 4e-22
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 77 4e-15
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 61 2e-10
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 51 2e-07
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 47 3e-06
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 46 4e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 45 1e-05
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 44 2e-05
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 43 4e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 42 9e-05
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 41 2e-04
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 41 2e-04
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 41 2e-04
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 39 7e-04
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 38 0.001
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 38 0.001
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 38 0.002
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 38 0.002
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 37 0.003
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 36 0.005
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.025
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 33 0.057
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 32 0.076
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 32 0.10
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 32 0.10
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 28 1.2
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.8
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 5.0
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 5.0
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 6.6
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 8.7
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.7
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 99.5 bits (237), Expect = 4e-22
Identities = 43/83 (51%), Positives = 57/83 (68%)
Frame = +2
Query: 260 PFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTM 439
PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA FP+YV + VK +
Sbjct: 81 PFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQL 140
Query: 440 GYKEPTPIQAQGWPIAMSGKNLV 508
G++ PTPIQ Q WP+AMSG+++V
Sbjct: 141 GFEAPTPIQQQAWPMAMSGRDMV 163
Score = 88.6 bits (210), Expect = 8e-19
Identities = 46/79 (58%), Positives = 54/79 (68%)
Frame = +1
Query: 511 VPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFWDTHLM 690
+ TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQ C +F + +
Sbjct: 165 ISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRI 224
Query: 691 FVTRVCFGGAPKREQARGL 747
T V +GG P+ Q R L
Sbjct: 225 RNTCV-YGGVPRGPQIRDL 242
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 76.6 bits (180), Expect = 4e-15
Identities = 38/80 (47%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Frame = +1
Query: 511 VPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFWDTHLM 690
V KTGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI C F L+
Sbjct: 461 VAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPF--LKLL 518
Query: 691 FVTRVC-FGGAPKREQARGL 747
+ C +GGAP ++Q L
Sbjct: 519 NIRACCAYGGAPIKDQIADL 538
Score = 49.6 bits (113), Expect = 5e-07
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Frame = +2
Query: 257 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVK 433
+ F K+FY + SP EV+E R + + + G++ P+ + + +
Sbjct: 375 EDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVIN 434
Query: 434 TMGYKEPTPIQAQGWPIAMSGKNLVAYPK 520
++GY++PT IQAQ P SG++++ K
Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRDVIGVAK 463
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 60.9 bits (141), Expect = 2e-10
Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 3/56 (5%)
Frame = +1
Query: 496 KEFSCVPKTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQ 654
K+ + +TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
Score = 44.8 bits (101), Expect = 1e-05
Identities = 17/59 (28%), Positives = 36/59 (61%)
Frame = +2
Query: 332 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLI 290
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 50.8 bits (116), Expect = 2e-07
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Frame = +1
Query: 511 VPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQPSC-CRFWDTHL 687
+ +TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q + T+L
Sbjct: 208 IAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQTYENLNSLIQGTNL 265
Query: 688 MFVTRVCFGGAPKREQAR 741
V V +GGAPK EQAR
Sbjct: 266 KAV--VVYGGAPKSEQAR 281
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = +2
Query: 323 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 493
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 494 GKNLV 508
G+++V
Sbjct: 202 GRDVV 206
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 46.8 bits (106), Expect = 3e-06
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = +1
Query: 517 KTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTRELAQQIQPSCCRFWD---T 681
+TGSGKTLAY+LP + + P R G A+++APTREL QQI + + +
Sbjct: 186 QTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLS 245
Query: 682 HLMFVTRVCFGGAPKREQAR 741
H + V G K E+AR
Sbjct: 246 HWIVSCNVIGGEKKKSEKAR 265
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 46.4 bits (105), Expect = 4e-06
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = +1
Query: 496 KEFSCVPKTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQ---PSC 663
K+ +TGSGKT AY++P + + Q I G AL+L PTRELAQQ+
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKL 111
Query: 664 CRFWDTHLMFV 696
F H+ F+
Sbjct: 112 TAFCSKHIRFI 122
Score = 35.1 bits (77), Expect = 0.011
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +2
Query: 359 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LVA
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVA 56
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 45.2 bits (102), Expect = 1e-05
Identities = 24/44 (54%), Positives = 29/44 (65%)
Frame = +1
Query: 520 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 651
TGSGKTLAY+LP + + G G AL++APTRELA QI
Sbjct: 47 TGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQI 88
Score = 34.3 bits (75), Expect = 0.019
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
F+ N +++ V G+K+ TP+QA P+ + K+LV
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLV 42
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 44.4 bits (100), Expect = 2e-05
Identities = 29/75 (38%), Positives = 40/75 (53%)
Frame = +1
Query: 517 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFWDTHLMFV 696
KTGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + + H
Sbjct: 84 KTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIGRLHSFSA 142
Query: 697 TRVCFGGAPKREQAR 741
+ G K E+ R
Sbjct: 143 GLIIGGNNYKEEKER 157
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +2
Query: 347 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+A
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMA 211
Score = 32.7 bits (71), Expect = 0.057
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Frame = +1
Query: 496 KEFSCVPKTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRE 636
++ +TGSGKT ++ P + + + P P+ + G P L+LAPTRE
Sbjct: 207 RDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRE 266
Query: 637 LAQQIQPSCCRFWDTHLMFVTRVCFGGAPKREQAR 741
L QI +F + V +GGA R Q R
Sbjct: 267 LVCQIHEESRKFCYRSWVRPCAV-YGGADIRAQIR 300
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 41.9 bits (94), Expect = 9e-05
Identities = 22/49 (44%), Positives = 31/49 (63%)
Frame = +1
Query: 505 SCVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 651
+C P TGSGKT+AY+ P + + P G A+++APTREL +QI
Sbjct: 88 ACAP-TGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQI 131
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 41.1 bits (92), Expect = 2e-04
Identities = 25/46 (54%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +1
Query: 517 KTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQI 651
+TGSGKT A+ LP I + NN P A+VLAPTRELA QI
Sbjct: 91 QTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQI 130
Score = 31.9 bits (69), Expect = 0.10
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
F+E D + + + +G+K PTPIQ + P+ ++ ++++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVI 87
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 41.1 bits (92), Expect = 2e-04
Identities = 24/45 (53%), Positives = 27/45 (60%)
Frame = +1
Query: 517 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 651
KTGSGKT A+ LP I + P G AL+L PTRELA QI
Sbjct: 52 KTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQI 91
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 40.7 bits (91), Expect = 2e-04
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1
Query: 517 KTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFWDTHLM 690
KTGSGKTLA+++P I ++ P R G G ++++PTRELA QI H
Sbjct: 134 KTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKELLKYHHQ 190
Query: 691 FVTRVCFGGAPKREQA 738
+ GGA +R +A
Sbjct: 191 -TFGIVIGGANRRAEA 205
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 39.1 bits (87), Expect = 7e-04
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +1
Query: 517 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 651
KTG+GKTLA++L A + P +++L+PTRELA QI
Sbjct: 84 KTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQI 128
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 38.3 bits (85), Expect = 0.001
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = +1
Query: 433 DNGLQRTDAHSSSRLADSYVWKEFSCVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 612
D+G + + S + + C K+G GKT ++L + I P+ DG ++
Sbjct: 68 DSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIE---PV---DGEVS 121
Query: 613 -LVLAPTRELAQQIQPSCCRFWDTHLMFV-TRVCFGG 717
LVL TRELA QI+ RF +L V T V +GG
Sbjct: 122 VLVLCHTRELAFQIKNEYARF-SKYLPDVRTAVFYGG 157
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 38.3 bits (85), Expect = 0.001
Identities = 24/46 (52%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +1
Query: 520 TGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQI 651
TGSGKTLA+ +P + H +R D ALV+APTRELA QI
Sbjct: 168 TGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQI 208
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +1
Query: 517 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 648
+TGSGKT A+++P I H+ + AL+L+P RELA Q
Sbjct: 114 RTGSGKTAAFVIPMIEHLKS---TLANSNTRALILSPNRELALQ 154
Score = 28.7 bits (61), Expect = 0.94
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
F+ + + + G+K PTPIQ + P+ + G+++V
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVV 110
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 37.5 bits (83), Expect = 0.002
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 520 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFWD-THLMFV 696
TGSGKT A+I+P + + +P ++ L+L PTRELA Q + T +M
Sbjct: 305 TGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVC 362
Query: 697 TRVCFGGAPKREQARGL 747
+C GG + Q + L
Sbjct: 363 --LCIGGLSLKLQEQEL 377
Score = 32.7 bits (71), Expect = 0.057
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
F+ N + +G+ +G++ PT IQ + P+A+ GK++V
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIV 300
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 37.1 bits (82), Expect = 0.003
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = +1
Query: 517 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFWDTHLMFV 696
K G+GKT A+++P++ ++ + + L+L PTRELA Q C+ H+
Sbjct: 89 KNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQTS-QVCKTLGKHMNVK 142
Query: 697 TRVCFGGAPKRE 732
V GG R+
Sbjct: 143 VMVTTGGTTLRD 154
Score = 35.9 bits (79), Expect = 0.006
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAYPKRVPAK 535
FE+ + G+ G++ P+PIQ + PIA+SG++++A K K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 36.3 bits (80), Expect = 0.005
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +1
Query: 517 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFWDTHLMFV 696
++G+GKT + + + I+ +++ AL+LAPTRELAQQIQ D LM V
Sbjct: 64 QSGTGKTATFSISVLQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGD--LMNV 116
Query: 697 -TRVCFGGAPKREQARGL 747
C GG R+ L
Sbjct: 117 ECHACIGGTLVRDDMAAL 134
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 33.9 bits (74), Expect = 0.025
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +1
Query: 520 TGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 651
TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 32.7 bits (71), Expect = 0.057
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +1
Query: 517 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 651
++G+GKT A+ L + ++ P P A+ LAP+RELA+QI
Sbjct: 161 QSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQI 200
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 32.3 bits (70), Expect = 0.076
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +2
Query: 323 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 502
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 503 LVA 511
++A
Sbjct: 61 VIA 63
Score = 32.3 bits (70), Expect = 0.076
Identities = 23/67 (34%), Positives = 34/67 (50%)
Frame = +1
Query: 517 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFWDTHLMFV 696
++G+GKT + + + I+ +R AL+L+PTRELA QIQ D H+
Sbjct: 66 QSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGD-HMNVQ 119
Query: 697 TRVCFGG 717
C GG
Sbjct: 120 CHACIGG 126
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.9 bits (69), Expect = 0.10
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 520 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 651
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.9 bits (69), Expect = 0.10
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 520 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 651
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.3 bits (60), Expect = 1.2
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -3
Query: 242 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPI--TR 69
P S V PS F ++ S +S AT+AK + +S KF + + T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 68 HDYFSDLVEDVYLNYGFFLTQG 3
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 451 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 326
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +2
Query: 311 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 442
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 311 PYEVEEYRNKHEVTVS 358
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 496 KEFSCVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 645
K+ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 535 KDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 636 LSGRRQDQSNRTITSPNRRLVI 571
LSG+R D S RT+ SP+ L I
Sbjct: 350 LSGKRVDFSGRTVISPDPNLRI 371
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 440 PLSLHLVAHNQENL--LLQSIE 381
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,133,100
Number of Sequences: 5004
Number of extensions: 69467
Number of successful extensions: 247
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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