Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00576
(751 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 101 7e-22
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 93 1e-19
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 93 1e-19
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 76 3e-14
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 76 3e-14
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 76 3e-14
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 76 3e-14
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 76 3e-14
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 76 3e-14
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 68 8e-12
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 61 9e-10
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 60 1e-09
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 58 5e-09
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 52 3e-07
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 52 5e-07
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 52 5e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 52 5e-07
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 50 1e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 50 2e-06
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 50 2e-06
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 50 2e-06
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 48 5e-06
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 48 9e-06
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 47 1e-05
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 47 2e-05
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 46 3e-05
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 46 4e-05
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 46 4e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 45 6e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 45 6e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 44 8e-05
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 44 1e-04
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 43 3e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 42 4e-04
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 42 6e-04
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 41 8e-04
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 41 0.001
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 40 0.001
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 40 0.001
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 40 0.002
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 39 0.003
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 39 0.004
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 39 0.004
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 38 0.005
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 38 0.005
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 38 0.005
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 38 0.009
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 37 0.012
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 36 0.029
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 36 0.029
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 36 0.038
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 36 0.038
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 36 0.038
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 35 0.066
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 34 0.088
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 34 0.088
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 34 0.12
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 33 0.15
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 33 0.27
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 32 0.35
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 32 0.47
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 31 0.82
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 31 0.82
At2g25460.1 68415.m03049 expressed protein 30 1.4
At4g27850.1 68417.m03999 proline-rich family protein contains pr... 30 1.9
At3g54380.2 68416.m06010 SAC3/GANP family protein contains Pfam ... 30 1.9
At3g54380.1 68416.m06009 SAC3/GANP family protein contains Pfam ... 30 1.9
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 29 3.3
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 29 4.4
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 29 4.4
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.8
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 28 5.8
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 28 5.8
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 28 5.8
At1g50610.1 68414.m05685 leucine-rich repeat transmembrane prote... 28 5.8
At1g76120.1 68414.m08839 tRNA pseudouridine synthase family prot... 28 7.6
At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein lo... 28 7.6
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 101 bits (241), Expect = 7e-22
Identities = 42/85 (49%), Positives = 57/85 (67%)
Frame = +2
Query: 254 IQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 433
+ PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDYV + VK
Sbjct: 56 LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVK 115
Query: 434 TMGYKEPTPIQAQGWPIAMSGKNLV 508
G+ EPTPIQ+QGWP+AM G++L+
Sbjct: 116 KAGFTEPTPIQSQGWPMAMKGRDLI 140
Score = 90.6 bits (215), Expect = 1e-18
Identities = 44/79 (55%), Positives = 55/79 (69%)
Frame = +1
Query: 511 VPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFWDTHLM 690
+ +TGSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQ +F + +
Sbjct: 142 IAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKI 201
Query: 691 FVTRVCFGGAPKREQARGL 747
T + +GG PK Q R L
Sbjct: 202 KTTCI-YGGVPKGPQVRDL 219
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 93.5 bits (222), Expect = 1e-19
Identities = 38/92 (41%), Positives = 61/92 (66%)
Frame = +2
Query: 233 PRLGFCFIQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 412
P+ F + F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 413 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
Score = 81.8 bits (193), Expect = 4e-16
Identities = 42/79 (53%), Positives = 55/79 (69%)
Frame = +1
Query: 511 VPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFWDTHLM 690
+ +TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ +F +
Sbjct: 208 IAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGV 267
Query: 691 FVTRVCFGGAPKREQARGL 747
T + +GGAPK Q R L
Sbjct: 268 RSTCI-YGGAPKGPQIRDL 285
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 93.5 bits (222), Expect = 1e-19
Identities = 38/92 (41%), Positives = 61/92 (66%)
Frame = +2
Query: 233 PRLGFCFIQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 412
P+ F + F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 413 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
+ + + +G+ EPTPIQAQGWP+A+ G++L+
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
Score = 81.8 bits (193), Expect = 4e-16
Identities = 42/79 (53%), Positives = 55/79 (69%)
Frame = +1
Query: 511 VPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFWDTHLM 690
+ +TGSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ +F +
Sbjct: 208 IAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGV 267
Query: 691 FVTRVCFGGAPKREQARGL 747
T + +GGAPK Q R L
Sbjct: 268 RSTCI-YGGAPKGPQIRDL 285
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 75.8 bits (178), Expect = 3e-14
Identities = 38/75 (50%), Positives = 49/75 (65%)
Frame = +1
Query: 511 VPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFWDTHLM 690
V KTGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI S R + L
Sbjct: 439 VAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIY-SDIRKFSKALG 497
Query: 691 FVTRVCFGGAPKREQ 735
+ +GG+ +Q
Sbjct: 498 IICVPVYGGSGVAQQ 512
Score = 65.7 bits (153), Expect = 3e-11
Identities = 30/88 (34%), Positives = 48/88 (54%)
Frame = +2
Query: 257 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 436
+PF KNFY + + + V YR + E+ V G +V PIQ++ + + +K
Sbjct: 354 EPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKK 413
Query: 437 MGYKEPTPIQAQGWPIAMSGKNLVAYPK 520
+ Y++P PIQAQ PI MSG++ + K
Sbjct: 414 LNYEKPMPIQAQALPIIMSGRDCIGVAK 441
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/79 (44%), Positives = 47/79 (59%)
Frame = +2
Query: 284 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 463
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 464 QAQGWPIAMSGKNLVAYPK 520
QAQ WPIAM G+++VA K
Sbjct: 185 QAQSWPIAMQGRDIVAIAK 203
Score = 64.5 bits (150), Expect = 7e-11
Identities = 36/84 (42%), Positives = 48/84 (57%)
Frame = +1
Query: 496 KEFSCVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFW 675
++ + KTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ +F
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELATQIQEEAVKFG 254
Query: 676 DTHLMFVTRVCFGGAPKREQARGL 747
+ + T +GGAPK Q R L
Sbjct: 255 RSSRISCT-CLYGGAPKGPQLRDL 277
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/79 (44%), Positives = 47/79 (59%)
Frame = +2
Query: 284 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 463
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 464 QAQGWPIAMSGKNLVAYPK 520
QAQ WPIAM G+++VA K
Sbjct: 185 QAQSWPIAMQGRDIVAIAK 203
Score = 64.5 bits (150), Expect = 7e-11
Identities = 36/84 (42%), Positives = 48/84 (57%)
Frame = +1
Query: 496 KEFSCVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFW 675
++ + KTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ +F
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELATQIQEEAVKFG 254
Query: 676 DTHLMFVTRVCFGGAPKREQARGL 747
+ + T +GGAPK Q R L
Sbjct: 255 RSSRISCT-CLYGGAPKGPQLRDL 277
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 75.8 bits (178), Expect = 3e-14
Identities = 35/79 (44%), Positives = 47/79 (59%)
Frame = +2
Query: 284 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 463
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 464 QAQGWPIAMSGKNLVAYPK 520
QAQ WPIAM G+++VA K
Sbjct: 185 QAQSWPIAMQGRDIVAIAK 203
Score = 64.5 bits (150), Expect = 7e-11
Identities = 36/84 (42%), Positives = 48/84 (57%)
Frame = +1
Query: 496 KEFSCVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFW 675
++ + KTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ +F
Sbjct: 196 RDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELATQIQEEAVKFG 254
Query: 676 DTHLMFVTRVCFGGAPKREQARGL 747
+ + T +GGAPK Q R L
Sbjct: 255 RSSRISCT-CLYGGAPKGPQLRDL 277
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 75.8 bits (178), Expect = 3e-14
Identities = 38/79 (48%), Positives = 53/79 (67%)
Frame = +1
Query: 511 VPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFWDTHLM 690
+ KTGSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI +F + +
Sbjct: 271 IAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGL 330
Query: 691 FVTRVCFGGAPKREQARGL 747
V+ V +GG K EQ + L
Sbjct: 331 RVSAV-YGGMSKHEQFKEL 348
Score = 74.1 bits (174), Expect = 9e-14
Identities = 29/88 (32%), Positives = 51/88 (57%)
Frame = +2
Query: 257 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 436
+P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F + +K
Sbjct: 186 EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKK 245
Query: 437 MGYKEPTPIQAQGWPIAMSGKNLVAYPK 520
Y++PT IQ Q PI +SG++++ K
Sbjct: 246 QAYEKPTAIQCQALPIVLSGRDVIGIAK 273
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/54 (61%), Positives = 40/54 (74%)
Frame = +1
Query: 511 VPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRF 672
V KTGSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI +F
Sbjct: 572 VAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKF 625
Score = 65.3 bits (152), Expect = 4e-11
Identities = 29/88 (32%), Positives = 48/88 (54%)
Frame = +2
Query: 257 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 436
+PF KNFY + + + EV YR + E+ V G +V PI+++ + + +K
Sbjct: 487 EPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKK 546
Query: 437 MGYKEPTPIQAQGWPIAMSGKNLVAYPK 520
+ Y++P PIQ Q PI MSG++ + K
Sbjct: 547 LNYEKPMPIQTQALPIIMSGRDCIGVAK 574
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 67.7 bits (158), Expect = 8e-12
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Frame = +2
Query: 266 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 433
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 434 TMGYKEPTPIQAQGWPIAMSGKNLVAYPK 520
+ G+ PTPIQAQ WPIA+ +++VA K
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAK 480
Score = 65.3 bits (152), Expect = 4e-11
Identities = 36/84 (42%), Positives = 50/84 (59%)
Frame = +1
Query: 496 KEFSCVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFW 675
++ + KTGSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ RF
Sbjct: 473 RDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFG 531
Query: 676 DTHLMFVTRVCFGGAPKREQARGL 747
+ + T +GGAPK Q + L
Sbjct: 532 RSSRISCT-CLYGGAPKGPQLKEL 554
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 60.9 bits (141), Expect = 9e-10
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Frame = +1
Query: 511 VPKTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQPSCCRFWDT 681
+ +TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI+ +F
Sbjct: 356 IAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKF-AH 414
Query: 682 HLMFVTRVCFGGAPKREQ 735
+L F GG EQ
Sbjct: 415 YLGFRVTSIVGGQSIEEQ 432
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/60 (23%), Positives = 33/60 (55%)
Frame = +2
Query: 329 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 60.5 bits (140), Expect = 1e-09
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +1
Query: 496 KEFSCVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFW 675
++ + KTGSGKTL Y++P +H+ R GP LVL+PTRELA QIQ +F
Sbjct: 267 RDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSR-MGPTILVLSPTRELATQIQVEALKFG 325
Query: 676 DTHLMFVTRVC-FGGAPKREQAR 741
+ ++ C +GGAPK Q +
Sbjct: 326 KSSK--ISCACLYGGAPKGPQLK 346
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +2
Query: 428 VKTMGYKEPTPIQAQGWPIAMSGKNLVAYPK 520
V + G+ P+PIQAQ WPIAM +++VA K
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAK 274
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 323 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 412
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 58.4 bits (135), Expect = 5e-09
Identities = 27/89 (30%), Positives = 51/89 (57%)
Frame = +2
Query: 242 GFCFIQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 421
G + +P + ++ P V K S +++ R + +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 422 QGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
+ +K G PTPIQ QG P+ +SG++++
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMI 138
Score = 52.4 bits (120), Expect = 3e-07
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Frame = +1
Query: 520 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQIQPSCCRF-----W 675
TGSGKTL ++LP I+ + PI G+GPIALV+ P+RELA+Q +F
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVE 202
Query: 676 DTHLMFVTRVCFGGAPKREQ 735
D + + +C GG R Q
Sbjct: 203 DGYPRLRSLLCIGGVDMRSQ 222
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 52.4 bits (120), Expect = 3e-07
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Frame = +1
Query: 496 KEFSCVPKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQPS 660
++ +TGSGKT A+ P I I ++R G P+A++L+PTRELA QI
Sbjct: 197 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDE 256
Query: 661 CCRF-WDTHLMFVTRVCFGGAPKREQARGL 747
+F + T + V V +GG P +Q R L
Sbjct: 257 AKKFSYQTGVKVV--VAYGGTPINQQLREL 284
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +2
Query: 254 IQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 430
+ PF + +P P ++ + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 431 KTMGYKEPTPIQAQGWPIAMSGKNLVA 511
+ Y +PTP+Q PI + G++L+A
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMA 201
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/89 (28%), Positives = 48/89 (53%)
Frame = +2
Query: 242 GFCFIQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQ 421
G + +P + P + K S + + R + + V+G ++ PI+ F++ FP V
Sbjct: 100 GITYTEPLLTG-WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVL 158
Query: 422 QGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
+K G +PTPIQ QG P+ ++G++++
Sbjct: 159 DTLKEKGIVQPTPIQVQGLPVILAGRDMI 187
Score = 48.0 bits (109), Expect = 7e-06
Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 3/46 (6%)
Frame = +1
Query: 520 TGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQ 648
TGSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQ 237
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 51.6 bits (118), Expect = 5e-07
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Frame = +1
Query: 496 KEFSCVPKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQPS 660
++ +TGSGKT A+ P I I I R G P+A++L+PTRELA QI
Sbjct: 184 RDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDE 243
Query: 661 CCRF-WDTHLMFVTRVCFGGAPKREQARGL 747
+F + T + V V +GG P +Q R L
Sbjct: 244 ARKFSYQTGVKVV--VAYGGTPVNQQIREL 271
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +2
Query: 260 PF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 436
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 437 MGYKEPTPIQAQGWPIAMSGKNLVA 511
Y +PTP+Q PI +G++L+A
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMA 188
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 51.6 bits (118), Expect = 5e-07
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1
Query: 520 TGSGKTLAYILPAIVHIN-NQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFWDTHLMFV 696
TG+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ + + V
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIV 135
Query: 697 TRVCFGGAPK-REQAR 741
GG K +E+AR
Sbjct: 136 PGYVMGGEKKAKEKAR 151
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +2
Query: 437 MGYKEPTPIQAQGWPIAMSGKNLV 508
MG++ PT +QAQ P+ +SG++++
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVL 71
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 50.4 bits (115), Expect = 1e-06
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +1
Query: 517 KTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFWDTHLMF 693
+TG+GKTLA+ +P I I RG P+ LVLAPTRELA+Q++ F ++
Sbjct: 149 RTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK---EFRESAPSL 205
Query: 694 VTRVCFGGAPKREQARGL 747
T +GG P +Q R L
Sbjct: 206 DTICLYGGTPIGQQMRQL 223
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 50.0 bits (114), Expect = 2e-06
Identities = 33/99 (33%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Frame = +1
Query: 430 KDNGLQRTDAHSSSRLADSYVWKEFSCVPKTGSGKTLAYILPAIVHINNQPPIRRGDGP- 606
KD G + + L K+ KTG+GKT+A++LPAI + PP R
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQP 457
Query: 607 --IALVLAPTRELAQQIQPSCCRFWDTHLMFVTRVCFGG 717
I LV+ PTRELA Q H +V GG
Sbjct: 458 PIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGG 496
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 50.0 bits (114), Expect = 2e-06
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Frame = +1
Query: 496 KEFSCVPKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQPS 660
++ +TGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 661 CCRF-WDTHLMFVTRVCFGGAPKREQARGL 747
+F + T + V V +GG P +Q R L
Sbjct: 249 AKKFSYQTGVKVV--VAYGGTPIHQQLREL 276
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 347 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 50.0 bits (114), Expect = 2e-06
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Frame = +1
Query: 496 KEFSCVPKTGSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQPS 660
++ +TGSGKT A+ P I I + R G P A++L+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 661 CCRF-WDTHLMFVTRVCFGGAPKREQARGL 747
+F + T + V V +GG P +Q R L
Sbjct: 249 AKKFSYQTGVKVV--VAYGGTPIHQQLREL 276
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 347 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 48.4 bits (110), Expect = 5e-06
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +1
Query: 517 KTGSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQPSCCRFWDTHLMF 693
+TG+GKTLA+ +P I I RG P LVLAPTRELA+Q++ F ++
Sbjct: 161 RTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK---EFRESAPSL 217
Query: 694 VTRVCFGGAPKREQARGL 747
T +GG P +Q R L
Sbjct: 218 DTICLYGGTPIGQQMREL 235
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 47.6 bits (108), Expect = 9e-06
Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Frame = +1
Query: 511 VPKTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQI 651
+ KTGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI
Sbjct: 157 IAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQI 207
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +2
Query: 317 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 490
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 491 SGKNLVAYPK 520
G++L+ K
Sbjct: 150 DGRDLIGIAK 159
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 47.2 bits (107), Expect = 1e-05
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Frame = +1
Query: 430 KDNGLQRTDAHSSSRLADSYVWKEFSCVPKTGSGKTLAYILPAIVHINNQPPIRRGD--G 603
KD G + + L K+ KTG+GKT+A++LP+I + PP +
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRP 129
Query: 604 PI-ALVLAPTRELAQQIQPSCCRFWDTHLMFVTRVCFGG 717
PI ALV+ PTRELA Q H +V GG
Sbjct: 130 PILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGG 168
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 46.8 bits (106), Expect = 2e-05
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Frame = +1
Query: 505 SCV--PKTGSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQIQPSCC 666
SC+ ++GSGKTLAY++P I + Q + G P +VL PT ELA Q+ +C
Sbjct: 413 SCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCR 472
Query: 667 RFWDTHLMFVTRVCFGGAPKREQARGL 747
+ + F + V GG +R Q L
Sbjct: 473 SISKSGVPFRSMVVTGGFRQRTQLENL 499
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 46.0 bits (104), Expect = 3e-05
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +1
Query: 496 KEFSCVPKTGSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQIQPSCC 666
K+ KTG+GKT+A++LP+I + PP R + I LV+ PTRELA Q
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEAN 177
Query: 667 RFWDTHLMFVTRVCFGGAPKREQARGL 747
H +V GG + R L
Sbjct: 178 ILLKYHPSIGVQVVIGGTKLPTEQRRL 204
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 45.6 bits (103), Expect = 4e-05
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Frame = +1
Query: 520 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFWDTHLM 690
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ + L
Sbjct: 156 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQ-AKMLGKGLP 214
Query: 691 FVTRVCFGGAPKREQ 735
F T + GG P Q
Sbjct: 215 FKTALVVGGDPMSGQ 229
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 308 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 481
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 482 IAMSGKNLVA 511
A++GK+L+A
Sbjct: 143 AALTGKSLLA 152
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 45.6 bits (103), Expect = 4e-05
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Frame = +1
Query: 520 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFWDTHLM 690
TGSGKT ++++P I +++ P + P+A+VLAPTREL Q++ + L
Sbjct: 19 TGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQ-AKMLGKGLP 77
Query: 691 FVTRVCFGGAPKREQ 735
F T + GG P Q
Sbjct: 78 FKTALVVGGDPMSGQ 92
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +2
Query: 350 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCA 209
Score = 37.5 bits (83), Expect = 0.009
Identities = 21/44 (47%), Positives = 27/44 (61%)
Frame = +1
Query: 520 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 651
TGSGKT A+ LP + + +P +R L+L PTRELA QI
Sbjct: 213 TGSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQI 254
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 44.8 bits (101), Expect = 6e-05
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = +2
Query: 332 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 499
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 500 NLVAYPKRVPAKRWPTSCQPL 562
A K + C L
Sbjct: 180 ECFACAPTGSGKTFAFICPML 200
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = +1
Query: 502 FSCVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 648
F+C P TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 182 FACAP-TGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = +1
Query: 517 KTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 651
KTGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 91 KTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 36.3 bits (80), Expect = 0.022
Identities = 23/68 (33%), Positives = 32/68 (47%)
Frame = +2
Query: 317 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 496
EVEE RN E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 497 KNLVAYPK 520
K++VA K
Sbjct: 84 KDVVARAK 91
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Frame = +1
Query: 517 KTGSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQI 651
+TG GKTLA++LP + + N P + G P LVL PTRELA+Q+
Sbjct: 141 RTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQV 190
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 42.7 bits (96), Expect = 3e-04
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Frame = +1
Query: 430 KDNGLQRTDAHSSSRLADSYVWKEFSCVPKTGSGKTLAYILPAI-VHINNQPPIRRGDGP 606
K+ G Q + + K+ +TGSGKTLA+++PA+ + + R G G
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG- 163
Query: 607 IALVLAPTRELAQQIQPSCCRFWDTHLMFVTRVCFGGAPKREQAR 741
+V+ PTRELA Q + H V+ V GG +R +A+
Sbjct: 164 -VIVICPTRELAIQTKNVAEELLKHHSQTVSMV-IGGNNRRSEAQ 206
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Frame = +1
Query: 436 NGLQRTDAHSSSRLADSYVWKEFSCVPKTGSGKTLAYILPAIVHI----NNQPPIRRGDG 603
+G+ + + L++ K+ KTG+GK++A++LPAI + N+ + +
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAP 405
Query: 604 PIALVLAPTRELAQQI 651
AL+L PTRELA QI
Sbjct: 406 IFALILCPTRELASQI 421
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Frame = +1
Query: 517 KTGSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQ 654
KTG+GKTLA+ +P I + + RR G P LVLAPTRELA+Q++
Sbjct: 147 KTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVE 197
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 41.1 bits (92), Expect = 8e-04
Identities = 30/103 (29%), Positives = 48/103 (46%)
Frame = +1
Query: 430 KDNGLQRTDAHSSSRLADSYVWKEFSCVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPI 609
K+ G R + + + ++ +TGSGKTLA+++PA V + + +G
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTG 228
Query: 610 ALVLAPTRELAQQIQPSCCRFWDTHLMFVTRVCFGGAPKREQA 738
LV+ PTRELA Q H V +V GG ++ +A
Sbjct: 229 VLVICPTRELAIQSYGVAKELLKYHSQTVGKV-IGGEKRKTEA 270
Score = 31.9 bits (69), Expect = 0.47
Identities = 20/84 (23%), Positives = 37/84 (44%)
Frame = +2
Query: 257 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 436
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 437 MGYKEPTPIQAQGWPIAMSGKNLV 508
MG+ T IQA+ P M G++++
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVL 195
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = +1
Query: 520 TGSGKTLAYILPAIVHINNQPPIRRGD-----GPIALVLAPTRELAQQIQPSCCRFWDTH 684
TGSGKTLAY+LP IV + + G P +VL PTREL++Q+ + H
Sbjct: 158 TGSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVY-RVAKSISHH 215
Query: 685 LMFVTRVCFGGAPKREQARGL 747
F + + GG+ R Q L
Sbjct: 216 ARFRSILVSGGSRIRPQEDSL 236
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Frame = +1
Query: 436 NGLQRTDAHSSSRLADSYVWKEFSCVPKTGSGKTLAYILPAIVHI----NNQPPIRRGDG 603
+G+ + + L++ K+ KTG+GK++A++LPAI + N+ + +
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAP 452
Query: 604 PIALVLAPTRELAQQI 651
L+L PTRELA QI
Sbjct: 453 IFVLILCPTRELASQI 468
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/75 (34%), Positives = 41/75 (54%)
Frame = +1
Query: 427 CKDNGLQRTDAHSSSRLADSYVWKEFSCVPKTGSGKTLAYILPAIVHINNQPPIRRGDGP 606
CK+ G+++ + + ++ + +TGSGKT A+ LP I+H + P G
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILHRLAEDPY----GV 127
Query: 607 IALVLAPTRELAQQI 651
ALV+ PTRELA Q+
Sbjct: 128 FALVVTPTRELAFQL 142
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
FE ++ + K +G ++PTP+Q P ++G++++
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVL 99
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/44 (45%), Positives = 31/44 (70%)
Frame = +1
Query: 517 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 648
+TGSGKT A+++P + + P +G G AL+L+PTR+LA+Q
Sbjct: 73 RTGSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQ 113
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
FE N V +K GYK PTPIQ + P+ +SG ++VA
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVA 70
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/66 (31%), Positives = 39/66 (59%)
Frame = +1
Query: 451 TDAHSSSRLADSYVWKEFSCVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 630
TD S++ + + ++ +TGSGKTLA+++P + ++ + DG ++++PT
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPT 152
Query: 631 RELAQQ 648
RELA Q
Sbjct: 153 RELAAQ 158
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Frame = +1
Query: 520 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQI 651
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQI 106
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Frame = +1
Query: 520 TGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQI 651
TGSGKTLA++LP I I N+ PP + + ++++PTREL+ QI
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQI 107
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/106 (23%), Positives = 45/106 (42%)
Frame = +1
Query: 433 DNGLQRTDAHSSSRLADSYVWKEFSCVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 612
+ G +R + + ++ K G+GKT A+ +P + I+ + + A
Sbjct: 148 EKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----A 202
Query: 613 LVLAPTRELAQQIQPSCCRFWDTHLMFVTRVCFGGAPKREQARGLW 750
+++ PTRELA Q C+ HL V GG ++ L+
Sbjct: 203 VIIVPTRELALQTS-QVCKELGKHLKIQVMVTTGGTSLKDDIMRLY 247
Score = 34.7 bits (76), Expect = 0.066
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAYPKRVPAK 535
FE+ + G+ G++ P+PIQ + PIA++G++++A K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/106 (23%), Positives = 45/106 (42%)
Frame = +1
Query: 433 DNGLQRTDAHSSSRLADSYVWKEFSCVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 612
+ G +R + + ++ K G+GKT A+ +P + I+ + + A
Sbjct: 148 EKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQ-----A 202
Query: 613 LVLAPTRELAQQIQPSCCRFWDTHLMFVTRVCFGGAPKREQARGLW 750
+++ PTRELA Q C+ HL V GG ++ L+
Sbjct: 203 VIIVPTRELALQTS-QVCKELGKHLKIQVMVTTGGTSLKDDIMRLY 247
Score = 34.7 bits (76), Expect = 0.066
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAYPKRVPAK 535
FE+ + G+ G++ P+PIQ + PIA++G++++A K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/46 (50%), Positives = 26/46 (56%)
Frame = +1
Query: 610 ALVLAPTRELAQQIQPSCCRFWDTHLMFVTRVCFGGAPKREQARGL 747
ALVLAPTRELAQQI+ R +L + C GG RE R L
Sbjct: 112 ALVLAPTRELAQQIE-KVMRALGDYLGVKAQACVGGTSVREDQRVL 156
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 37.5 bits (83), Expect = 0.009
Identities = 22/44 (50%), Positives = 24/44 (54%)
Frame = +1
Query: 610 ALVLAPTRELAQQIQPSCCRFWDTHLMFVTRVCFGGAPKREQAR 741
ALVLAPTRELAQQI+ R +L C GG RE R
Sbjct: 110 ALVLAPTRELAQQIE-KVMRALGDYLGVKVHACVGGTSVREDQR 152
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 37.1 bits (82), Expect = 0.012
Identities = 23/45 (51%), Positives = 30/45 (66%)
Frame = +1
Query: 520 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQ 654
TGSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVK 111
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 35.9 bits (79), Expect = 0.029
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Frame = +1
Query: 493 WKEFSCVPKTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQI 651
+K+ + TGSGKTLA+++P + + PP + + ++++PTREL+ QI
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQI 106
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 35.9 bits (79), Expect = 0.029
Identities = 24/78 (30%), Positives = 38/78 (48%)
Frame = +1
Query: 517 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFWDTHLMFV 696
K G+GKT A+ +P + I+ + + + A++L PTRELA Q C+ +L
Sbjct: 199 KNGTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTS-QVCKELSKYLKIE 252
Query: 697 TRVCFGGAPKREQARGLW 750
V GG R+ L+
Sbjct: 253 VMVTTGGTSLRDDIMRLY 270
Score = 34.3 bits (75), Expect = 0.088
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAYPKRVPAK 535
FE+ + +G+ G+++P+PIQ + PIA++G +++A K K
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 35.5 bits (78), Expect = 0.038
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +1
Query: 433 DNGLQRTDAHSSSRLADSYVWKEFSCVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPI- 609
D+G + + + + + C K+G GKT ++L + I P G +
Sbjct: 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVS 116
Query: 610 ALVLAPTRELAQQIQPSCCRF 672
ALVL TRELA QI RF
Sbjct: 117 ALVLCHTRELAYQICNEFVRF 137
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 35.5 bits (78), Expect = 0.038
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +1
Query: 433 DNGLQRTDAHSSSRLADSYVWKEFSCVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPI- 609
D+G + + + + + C K+G GKT ++L + I P G +
Sbjct: 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVS 116
Query: 610 ALVLAPTRELAQQIQPSCCRF 672
ALVL TRELA QI RF
Sbjct: 117 ALVLCHTRELAYQICNEFVRF 137
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 35.5 bits (78), Expect = 0.038
Identities = 22/44 (50%), Positives = 24/44 (54%)
Frame = +1
Query: 610 ALVLAPTRELAQQIQPSCCRFWDTHLMFVTRVCFGGAPKREQAR 741
ALVLAPTRELAQQI+ D + V C GG RE R
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKV-HACVGGTSVREDQR 152
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 34.7 bits (76), Expect = 0.066
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 377 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVA 511
PI+ F++ D V +GV GYK+P+ IQ + + G++++A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIA 64
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 34.3 bits (75), Expect = 0.088
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAYPKRVPAK 535
FE+ + +G+ G+++P+PIQ + PIA++G +++A K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
Score = 34.3 bits (75), Expect = 0.088
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = +1
Query: 517 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFWDTHLMFV 696
K G+GKT A+ +P + I+ + + A++L PTRELA Q C+ +L
Sbjct: 169 KNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTS-QVCKELSKYLNIQ 222
Query: 697 TRVCFGGAPKRE 732
V GG R+
Sbjct: 223 VMVTTGGTSLRD 234
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 34.3 bits (75), Expect = 0.088
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVAYPKRVPAK 535
FE+ + +G+ G+++P+PIQ + PIA++G +++A K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
Score = 34.3 bits (75), Expect = 0.088
Identities = 23/72 (31%), Positives = 35/72 (48%)
Frame = +1
Query: 517 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQPSCCRFWDTHLMFV 696
K G+GKT A+ +P + I+ + + A++L PTRELA Q C+ +L
Sbjct: 169 KNGTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTS-QVCKELSKYLNIQ 222
Query: 697 TRVCFGGAPKRE 732
V GG R+
Sbjct: 223 VMVTTGGTSLRD 234
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 33.9 bits (74), Expect = 0.12
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 508 CVPKTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQIQPSCCRF 672
C K+G GKT ++L + I P G + ALVL TRELA QI RF
Sbjct: 5 CQAKSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQICNEFVRF 54
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +2
Query: 365 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVI 50
Score = 33.5 bits (73), Expect = 0.15
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Frame = +1
Query: 427 CKDNGLQRTDAHSSSRLADSYVWKEFSCVPKTGSGKTLAYILPAIVHI-----NNQPPIR 591
C+ G + + L + K+ + +TGSGKT A+ +P + + +++P
Sbjct: 24 CERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKG 83
Query: 592 RGDGP--IALVLAPTRELAQQI 651
R P A VL+PTRELA QI
Sbjct: 84 RRPDPAFFACVLSPTRELAIQI 105
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 32.7 bits (71), Expect = 0.27
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Frame = +1
Query: 520 TGSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI 651
TGSGKTLAY+LP + I R A+++AP+REL QI
Sbjct: 156 TGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQI 207
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 389 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 508
FEE PD + ++ G+ PT +Q+ P + G + V
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAV 151
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 32.3 bits (70), Expect = 0.35
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +1
Query: 517 KTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 651
+TGSGKTL Y+L IN Q A+++ PTREL Q+
Sbjct: 121 QTGSGKTLTYLLLIFSLINPQ-----RSSVQAVIVVPTRELGMQV 160
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 31.9 bits (69), Expect = 0.47
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +1
Query: 523 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 648
GSGKT ++L + ++ P +R P AL + PTRELA Q
Sbjct: 141 GSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQ 177
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 31.1 bits (67), Expect = 0.82
Identities = 25/91 (27%), Positives = 43/91 (47%)
Frame = +2
Query: 269 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYK 448
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+ K +G
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK-CKDVG-- 216
Query: 449 EPTPIQAQGWPIAMSGKNLVAYPKRVPAKRW 541
T + Q W +L+ + + +PA RW
Sbjct: 217 -ATLVICQ-WGFDDEANHLLMH-RNLPAVRW 244
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 31.1 bits (67), Expect = 0.82
Identities = 25/91 (27%), Positives = 43/91 (47%)
Frame = +2
Query: 269 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYK 448
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+ K +G
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK-CKDVG-- 292
Query: 449 EPTPIQAQGWPIAMSGKNLVAYPKRVPAKRW 541
T + Q W +L+ + + +PA RW
Sbjct: 293 -ATLVICQ-WGFDDEANHLLMH-RNLPAVRW 320
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -2
Query: 198 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 82
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At4g27850.1 68417.m03999 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 577
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -1
Query: 640 LTLW*APRPKQSDHHLSE*AVGYLCAQWLARCR-PTFCRNPFWVR 509
LTL+ K + HL L W+ +C FC NP W+R
Sbjct: 381 LTLFLIYLLKMTKTHLGAKKPSRLILSWITKCHFQMFCGNPMWIR 425
>At3g54380.2 68416.m06010 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 383
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +1
Query: 436 NGLQRTDAHSSSRLADSYVWKEFSCVPKTGSG 531
N R + SSSR++++Y ++FS P+TGSG
Sbjct: 2 NRRNRGSSSSSSRVSNTYGNRQFSDNPRTGSG 33
>At3g54380.1 68416.m06009 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 406
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +1
Query: 436 NGLQRTDAHSSSRLADSYVWKEFSCVPKTGSG 531
N R + SSSR++++Y ++FS P+TGSG
Sbjct: 2 NRRNRGSSSSSSRVSNTYGNRQFSDNPRTGSG 33
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Frame = +1
Query: 430 KDNGLQRTDAHSSSRLADSYVWKEFSCVPKTGSGKTLAYILPAIVHINN----QPPIRRG 597
+D+G R + + K+ +TGSGKT Y+ P I + N R
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNRE 155
Query: 598 DGP-----IALVLAPTRELAQQI 651
+ P I+L+L P L +Q+
Sbjct: 156 ERPFPLKNISLILCPNVMLCEQV 178
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +1
Query: 610 ALVLAPTRELAQQIQPSCCRFWDTHLMFVTRVCFGGAPKREQARGL 747
AL+L+PTRELA Q + + + H C GG E R L
Sbjct: 106 ALILSPTRELATQTEKT-IQAIGLHANIQAHACIGGNSVGEDIRKL 150
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 28.7 bits (61), Expect = 4.4
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 15/71 (21%)
Frame = +1
Query: 484 SYVWKEFSCVPKTGSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALV 618
+Y K+ +TGSGKTLA+ LP + + + DG + AL+
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALI 284
Query: 619 LAPTRELAQQI 651
+ PTRELA Q+
Sbjct: 285 ITPTRELALQV 295
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 650 ICCANSLVGAKTKAIGPSPLRI 585
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +2
Query: 278 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 454
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 455 TPIQAQGWPIAMSGKNLVAY 514
+P++ + P+ S ++ V+Y
Sbjct: 232 SPVRDEYAPVIFS-QDSVSY 250
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +2
Query: 278 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 454
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 455 TPIQAQGWPIAMSGKNLVAY 514
+P++ + P+ S ++ V+Y
Sbjct: 255 SPVRDEYAPVIFS-QDSVSY 273
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +2
Query: 278 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 454
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 455 TPIQAQGWPIAMSGKNLVAY 514
+P++ + P+ S ++ V+Y
Sbjct: 232 SPVRDEYAPVIFS-QDSVSY 250
>At1g50610.1 68414.m05685 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor-like protein kinase
GB:AAC12254 GI:3015488 from [Lycopersicon esculentum]
Length = 686
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +2
Query: 239 LGFCFIQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 412
L FCF+Q +NF +P+ + +E Y N H+ T + + + + PD
Sbjct: 299 LVFCFVQSRRRNFLSAYPSSAGKE--RIESY-NYHQSTNKNNKPAESVNHTRRGSMPD 353
>At1g76120.1 68414.m08839 tRNA pseudouridine synthase family protein
similar to SP|Q9Y606 tRNA pseudouridine synthase A (EC
4.2.1.70) (Uracil hydrolyase) {Homo sapiens}; contains
Pfam profile PF01416: tRNA pseudouridine synthase
Length = 463
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 248 CFIQPFNKNFYDPHPTV-LKRSPYEVEEYRNKH 343
CF +N+NF D H V ++ E E ++ KH
Sbjct: 375 CFFTSYNRNFEDSHEEVSMEAYKEEAEAFKLKH 407
>At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein low
similarity to mannosidase [gi:5359712] from Cellulomonas
fimi
Length = 944
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Frame = +2
Query: 338 KHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQA----QGWPIAMSGKNL 505
K T E+ P +F++ + V ++G I+A +GW I + K L
Sbjct: 520 KGNFTDGPYEIQYPEDFFKDTYYKYGFNPEVGSVGMPVAETIRATMPPEGWTIPLFKKGL 579
Query: 506 VAYPKRVPAKRW 541
+ K VP + W
Sbjct: 580 DGFIKEVPNRMW 591
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,386,933
Number of Sequences: 28952
Number of extensions: 362383
Number of successful extensions: 1189
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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