Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00575
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    25   9.0  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   9.0  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    25   9.0  

>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 449 NCLDTLRRSGFYSPPLPW 502
           N +DT  R+G Y+ PLP+
Sbjct: 42  NYIDTYLRTGLYTAPLPY 59


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +3

Query: 567 SNNLLFLKYAASKKIPLII--STGMVDKTAVKTIYDIISSDHKQFCLLHCISAY 722
           SN + F  +  S ++  +I  S G  D      +YDI+ +++   CLL  ISAY
Sbjct: 419 SNTVSFDNFFNSLELIFVIMSSNGFTD-----IMYDIMDAEYFVSCLLFIISAY 467


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 624 STGMVDKTAVKTIYDIISSDHKQFCLLHCISAYPVP 731
           S  +     ++ +  +I + H   CLLH +S  P P
Sbjct: 178 SHNLTPSNVIRELPIVIHNSHLATCLLHSLSEPPTP 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,286,975
Number of Sequences: 5004
Number of extensions: 69605
Number of successful extensions: 188
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)