Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00575
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0621 + 4645583-4646902                                           30   2.3  
02_04_0211 + 20957553-20957828,20957944-20958258,20962094-209628...    29   4.1  
04_01_0178 + 2006369-2006494,2006582-2006664,2007693-2007819,200...    29   5.4  
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955...    28   9.4  

>01_01_0621 + 4645583-4646902
          Length = 439

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 211 IIAANSNVISYFDFHHFERSIKTNKLKPISSSTGWLGSMFTLC 83
           IIA  SNV SY++  H ER+ KT+    +       G+   +C
Sbjct: 232 IIAPKSNVASYYNRRHTERNQKTSYSMTVQCVVDSTGAFTDVC 274


>02_04_0211 +
           20957553-20957828,20957944-20958258,20962094-20962801,
           20963362-20963609,20963758-20964101,20964200-20964236,
           20964270-20964575,20965281-20965347,20965498-20965626
          Length = 809

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +2

Query: 422 WNSPIHNTENCLDTLRRSGFYSPPLPW-TWIF*LSG*PKSAIYPNRLRGLEQLALPKVRC 598
           W   +H+     + +RR  F  P LPW  ++   SG P S  + +   G E  A P V  
Sbjct: 604 WPGSVHDQRVLSEAVRRYPFAFPRLPWGKYLLVDSGYP-SRYHVDDFEGNE--APPPVG- 659

Query: 599 FEKDSFNYINGDGRQNCRKD 658
            ++++FNY++   R    +D
Sbjct: 660 -KEETFNYMHSAMRNTVERD 678


>04_01_0178 +
           2006369-2006494,2006582-2006664,2007693-2007819,
           2008579-2008638,2009606-2009735,2009821-2010047,
           2010226-2010318,2010395-2010466,2011392-2011532,
           2012045-2012047,2012387-2012443,2012909-2012995,
           2013081-2013116
          Length = 413

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 370 YDNPNSWGKTYGEHKSHLEFSDT---QYRELFRYAQEVGILFT 489
           Y +PNS+G+     K H+++S T    +R    +A  VG   T
Sbjct: 65  YCSPNSYGQNNLHEKPHIDYSSTICDPFRHANEFAPTVGFFLT 107


>07_03_0919 -
           22594980-22595111,22595398-22595427,22595522-22595587,
           22596021-22596107,22596868-22596921,22597696-22597762,
           22598099-22598215,22598536-22598637,22598784-22598902,
           22598966-22599049,22599220-22599354,22599470-22599505,
           22599581-22599700,22600557-22600645,22601507-22601596,
           22601629-22601802,22602135-22602235,22602323-22602363,
           22602872-22602883
          Length = 551

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +2

Query: 551 NRLRGLEQLALPKVRCFEKDSFNYINGDGRQNCRKDNLRYHFL 679
           N LR L + + P        +    NG GR +C K  LR H L
Sbjct: 145 NALRRLRRSSAPAPPADASAAAATANGSGRDSCSKMRLRLHLL 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,082,738
Number of Sequences: 37544
Number of extensions: 446995
Number of successful extensions: 968
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)