Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00575
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6382| Best HMM Match : Pkinase_Tyr (HMM E-Value=3e-06)              31   0.77 
SB_1048| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_28383| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_24308| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_6382| Best HMM Match : Pkinase_Tyr (HMM E-Value=3e-06)
          Length = 244

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 667 ISFPRTTSSSVCFIAYRRIRCHLK 738
           ISF R  ++ +CF+A R++RC +K
Sbjct: 204 ISFARQIAAGMCFLASRKVRCFIK 227


>SB_1048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 599

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 145 TNKLKPISSSTGWLGSMFTLCNKGLSTSRSRSNWIN 38
           T  L P+S S+  LGS +   N G+ST  +    IN
Sbjct: 173 TMSLPPVSPSSSMLGSSWNFYNNGMSTGAASMVSIN 208


>SB_28383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 54  LEREVDKPLLHSVNILPSHPVELEIGFSLFVFMERS 161
           L   VDK L HS+++  SH V++ +  S+ +++  S
Sbjct: 35  LSHSVDKDLSHSLDMYLSHNVDMYLSHSVDMYLSHS 70


>SB_24308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 740

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -3

Query: 474 DLLSVSKQFSVLCIGEFQMTFVFSVRLSPRVWVVVRPF*IFFCKFLSETCLLKL 313
           DL  + K  + +CIG       FSV+L+ RV VV     +     L  T L++L
Sbjct: 369 DLKILEKLLAAVCIGVITYVNCFSVKLATRVQVVFTAAKLIAIAMLIITGLVRL 422


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,324,620
Number of Sequences: 59808
Number of extensions: 504452
Number of successful extensions: 1078
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)