Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00575
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF038614-2|AAB92061.2|  321|Caenorhabditis elegans Serpentine re...    29   4.8  
U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore co...    28   8.4  
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co...    28   8.4  

>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
           protein C18H2.1 protein.
          Length = 1770

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 306 LREVSKDMSRREIYKKISRKALRQPKLVGKDVRRTQK 416
           L E +K    RE++K   ++ L+ PKL  K++R  +K
Sbjct: 715 LDEATKVNGFREVFKPAYKQLLKTPKLFPKEIRNIEK 751


>AF038614-2|AAB92061.2|  321|Caenorhabditis elegans Serpentine
           receptor, class v protein4 protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -1

Query: 728 HRIRRYAMKQTELLVVRGN---DIVNCLYGSFVDHPR*YN*RNLFRSS 594
           H++R+   K +  L++R +   D++  LY   V  PR Y   NLF ++
Sbjct: 36  HQLRKNVFKSSFFLIIRMHAITDLLMFLYVELVARPRKYRVHNLFEAA 83


>U80446-3|AAL77180.1|  889|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform b protein.
          Length = 889

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 631 PVDIIKGIFFEAAYFRKSKLFESPEPIWINGTF 533
           P+  +   F EA+ F  SK FE P P    G+F
Sbjct: 740 PIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSF 772


>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
           complex protein protein6, isoform a protein.
          Length = 1562

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 631 PVDIIKGIFFEAAYFRKSKLFESPEPIWINGTF 533
           P+  +   F EA+ F  SK FE P P    G+F
Sbjct: 740 PIVKLAAAFVEASTFDNSKPFEDPHPQIFGGSF 772


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,125,178
Number of Sequences: 27780
Number of extensions: 390023
Number of successful extensions: 888
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)