Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00575
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.1  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   7.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   7.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.5  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 121 SSTGWLGSMFTLCNKGLSTSRSRSNWINKVSC 26
           S  GW   ++TL  KGL  S + +      SC
Sbjct: 503 SFAGWTAPIYTLKRKGLIKSENEAADFFSGSC 534


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 121 SSTGWLGSMFTLCNKGLSTSRSRSNWINKVSC 26
           S  GW   ++TL  KGL  S + +      SC
Sbjct: 503 SFAGWTAPIYTLKRKGLIKSENEAADFFSGSC 534


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 121 SSTGWLGSMFTLCNKGLSTSRSRSNWINKVSC 26
           S  GW   ++TL  KGL  S + +      SC
Sbjct: 503 SFAGWTAPIYTLKRKGLIKSENEAADFFSGSC 534


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 722 IRRYAMKQTELLVVRGNDIV 663
           + RYA K   +L +RG ++V
Sbjct: 721 VSRYAEKSRRMLYLRGREVV 740


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 596 CFEKDSFNYINGD 634
           C EKDS + I+GD
Sbjct: 77  CVEKDSIHSIDGD 89


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +2

Query: 548 PNRLRGLEQLALPKVRCFEKDSFNYINGDG 637
           P    G+E L +P    +  D   Y N DG
Sbjct: 90  PKEYGGVEMLHVPSDHIWRPDIVLYNNADG 119


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +3

Query: 585 LKYAASKKIPLIISTGMVDKTAVKTI 662
           ++ A   K+P+I++   +DK  +  I
Sbjct: 238 IEMAKDAKVPIIVAINKIDKPNIDII 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,055
Number of Sequences: 438
Number of extensions: 5397
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)