Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00575
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger) fa...    30   1.9  
At5g10300.1 68418.m01195 hydrolase, alpha/beta fold family prote...    28   5.9  
At1g80620.1 68414.m09461 ribosomal protein S15 family protein si...    28   5.9  
At1g01460.1 68414.m00061 phosphatidylinositol-4-phosphate 5-kina...    28   5.9  

>At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|P79263
           Inter-alpha-trypsin inhibitor heavy chain H4 precursor
           {Sus scrofa}; contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 641

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 516 DFLVNLKVPFIQIGSGDSNNLLFLKYAASKKIPL 617
           DFLV L++P    GSG+S +L  LK     K P+
Sbjct: 439 DFLVLLEIPCCDNGSGESESLSLLKVRCVYKDPV 472


>At5g10300.1 68418.m01195 hydrolase, alpha/beta fold family protein
           similar to ethylene-induced esterase [Citrus sinensis]
           GI:14279437, alpha-hydroxynitrile lyase [Manihot
           esculenta] GI:2780225; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 258

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +3

Query: 489 RLCHGHGSFDFLVNL--KVPFIQIGSGDSNNLLFLKYAASKKIPLIISTGMVDKTAVKTI 662
           ++ H  GSF F  +L  K  F + G G S   +++  +  K IP      M+D   V  +
Sbjct: 171 KMLHRQGSF-FTEDLSKKEKFSEEGYG-SVQRVYVMSSEDKAIPCDFIRWMIDNFNVSKV 228

Query: 663 YDIISSDH 686
           Y+I   DH
Sbjct: 229 YEIDGGDH 236


>At1g80620.1 68414.m09461 ribosomal protein S15 family protein
           similar to ribosomal protein S15 GB:AAD36415 from
           [Thermotoga maritima]
          Length = 414

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +1

Query: 340 KFTKKYLERPYDNPNSWGKTYGEHKSHLEFSDTQYRELF 456
           KFTK     P+ N N WG   G  K  LE    Q  E +
Sbjct: 275 KFTKAQKSDPFQNTNIWGVLSGTPKYMLEPPKDQLVETY 313


>At1g01460.1 68414.m00061 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to
           phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
           [Arabidopsis thaliana] GI:3702691; contains Pfam profile
           PF01504: Phosphatidylinositol-4-phosphate 5-Kinase
          Length = 427

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 504 HGSFDFLVNLKVPFIQIGSGDSNNLLFLKYAAS 602
           HGS D L+ +   F   GS DSN+  F+K A++
Sbjct: 232 HGSIDELIPVYDSFTSRGSVDSNSSKFMKTASN 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,158,084
Number of Sequences: 28952
Number of extensions: 365709
Number of successful extensions: 882
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)