Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00573
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 136 3e-33
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 136 4e-33
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 1.1
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 2.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 2.0
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.5
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 4.6
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 26 4.6
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 26 6.1
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 26 6.1
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 26 6.1
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 26 6.1
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 8.1
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 8.1
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 25 8.1
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 8.1
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 25 8.1
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 136 bits (329), Expect = 3e-33
Identities = 64/95 (67%), Positives = 75/95 (78%), Gaps = 1/95 (1%)
Frame = +2
Query: 257 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 436
GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRT 140
Query: 437 SDRWKAQVIEALRRAKFKFPGRQKSTYQRS-GVSQ 538
D +A IEALRR ++KFPG+Q+ + G SQ
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175
Score = 120 bits (288), Expect = 3e-28
Identities = 53/66 (80%), Positives = 60/66 (90%)
Frame = +3
Query: 54 KNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICC 233
KNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC
Sbjct: 13 KNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICA 72
Query: 234 NKYLVK 251
NKYLVK
Sbjct: 73 NKYLVK 78
Score = 54.4 bits (125), Expect = 2e-08
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +1
Query: 478 CQVQVPRTSKVYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 633
CQ + P ++ VSKKWGF++Y RDE+ + R G + DGC ++ + G L
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 136 bits (328), Expect = 4e-33
Identities = 64/95 (67%), Positives = 75/95 (78%), Gaps = 1/95 (1%)
Frame = +2
Query: 257 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRS 436
GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 81 GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRT 140
Query: 437 SDRWKAQVIEALRRAKFKFPGRQKSTYQRS-GVSQ 538
D +A IEALRR ++KFPG+Q+ + G SQ
Sbjct: 141 KDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQ 175
Score = 120 bits (288), Expect = 3e-28
Identities = 53/66 (80%), Positives = 60/66 (90%)
Frame = +3
Query: 54 KNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICC 233
KNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC
Sbjct: 13 KNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICA 72
Query: 234 NKYLVK 251
NKYLVK
Sbjct: 73 NKYLVK 78
Score = 54.4 bits (125), Expect = 2e-08
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +1
Query: 478 CQVQVPRTSKVYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 633
CQ + P ++ VSKKWGF++Y RDE+ + R G + DGC ++ + G L
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 75 SRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAG 221
++FC V + KI + +KRA +D LC+ +S + E ++ +LE+G
Sbjct: 45 TKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESG 94
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 99 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 218
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +3
Query: 120 DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNAERI 266
++ KKRA DD + +VS EYE L SS+ ++ N KY+ KN +++
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQKL 1086
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 26.6 bits (56), Expect = 3.5
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -3
Query: 391 STLRLAKRTTHPSLEPISSS-A**HFIDADNVERVKSHADMELILSAFFTRYLLQQIRPA 215
+T +LAKR T PSL P S+ H I + ++ KS A+ IL F + +Q
Sbjct: 957 TTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAAND--ILHLFKKKAKSEQSNAK 1014
Query: 214 SKASELSCSYSSDT 173
S +S + S T
Sbjct: 1015 SSSSSIKESKKMKT 1028
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 133 RERPLTTFHCACTWCPTNMNS 195
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.6
Identities = 29/86 (33%), Positives = 40/86 (46%)
Frame = +1
Query: 55 KINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCPTNMNS*AQRLWRQDVSAA 234
KI R+R+ SV + L S+S W R L H T + + A RL + VS
Sbjct: 340 KIKRLRSEPSVSLTL---SIS--WYERFEKL--MHAQNTMLRSAFSHVA-RLPMETVSQL 391
Query: 235 ISTS*RTRKGSVPYPHETSPFPRYPH 312
+S T +P P ETSP P+ P+
Sbjct: 392 LSHYTETISQYLP-PSETSPIPKTPN 416
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 588 SEAALFTQLLKLITFILCETPLL*YV 511
S+A F ++L FI C +P+L Y+
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYL 288
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 588 SEAALFTQLLKLITFILCETPLL*YV 511
S+A F ++L FI C +P+L Y+
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYL 288
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 588 SEAALFTQLLKLITFILCETPLL*YV 511
S+A F ++L FI C +P+L Y+
Sbjct: 235 SKARFFRRMLNAFIFIFCASPMLHYL 260
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 588 SEAALFTQLLKLITFILCETPLL*YV 511
S+A F ++L FI C +P+L Y+
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYL 288
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -2
Query: 218 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 102
CL L L + H++ ++W+ +N R LL + + + G
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 260 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 364
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 8.1
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Frame = -1
Query: 234 CSRYVLPP-KP-LSSAVHIRRTPSARTVESRQRS------LSSYPNRRYGSWDQVHPDRT 79
C++ + PP KP + SA+ S T E S LS +R+ +W P
Sbjct: 494 CAKKIQPPFKPSVESAIDTSNFDSEFTSEIPMDSVVADSHLSETVQQRFANWSYQRPTTI 553
Query: 78 SISDTVYFCSTGSIL 34
SD + + GS++
Sbjct: 554 DTSDDINTIAPGSVI 568
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 8.1
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 85 VGVYLIPRSVSSIWV 129
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -3
Query: 517 IRRLLTSGELELGTAQSLDDLCLPPVTRA 431
++++L +G + T + +DDLCL + A
Sbjct: 280 VKKILNAGANVILTTKGIDDLCLKSIIEA 308
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,666
Number of Sequences: 5004
Number of extensions: 66528
Number of successful extensions: 217
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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