Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00573
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 141 4e-34
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 140 1e-33
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 137 9e-33
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.2
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 29 3.6
05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517 29 3.6
10_08_0309 + 16666047-16666543,16666626-16666836,16666925-166670... 29 4.8
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 6.4
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 28 6.4
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 28 6.4
02_01_0254 - 1669461-1669590,1669833-1672318 28 8.4
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 141 bits (342), Expect = 4e-34
Identities = 66/92 (71%), Positives = 74/92 (80%)
Frame = +2
Query: 248 KERGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 427
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 78 KNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 137
Query: 428 VRSSDRWKAQVIEALRRAKFKFPGRQKSTYQR 523
VR + EALRRAKFKFPGRQK + R
Sbjct: 138 VRCKESNAKHAEEALRRAKFKFPGRQKIIHSR 169
Score = 116 bits (280), Expect = 1e-26
Identities = 51/68 (75%), Positives = 58/68 (85%)
Frame = +3
Query: 54 KNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICC 233
KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +SSEALEA RI C
Sbjct: 13 KNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIAC 72
Query: 234 NKYLVKNA 257
NKY+ KNA
Sbjct: 73 NKYMTKNA 80
Score = 52.0 bits (119), Expect = 5e-07
Identities = 22/47 (46%), Positives = 30/47 (63%)
Frame = +1
Query: 493 PRTSKVYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 633
P K+ S+KWGFTK+ R+E+ KL+ EGR+ +DG Q HG L
Sbjct: 160 PGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 140 bits (338), Expect = 1e-33
Identities = 65/87 (74%), Positives = 71/87 (81%)
Frame = +2
Query: 248 KERGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 427
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 74 KSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 133
Query: 428 VRSSDRWKAQVIEALRRAKFKFPGRQK 508
VR EALRRAKFKFPGRQK
Sbjct: 134 VRCKPNNAVHASEALRRAKFKFPGRQK 160
Score = 109 bits (262), Expect = 2e-24
Identities = 48/68 (70%), Positives = 57/68 (83%)
Frame = +3
Query: 54 KNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICC 233
KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA RI C
Sbjct: 9 KNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIAC 68
Query: 234 NKYLVKNA 257
NKY+ K+A
Sbjct: 69 NKYMTKSA 76
Score = 47.6 bits (108), Expect = 1e-05
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +1
Query: 493 PRTSKVYVSKKWGFTKYERDEFEKLREEGRLANDG 597
P K+ S+KWGFTK+ RDE+ +L+ EGR+ DG
Sbjct: 156 PGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDG 190
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 137 bits (331), Expect = 9e-33
Identities = 64/87 (73%), Positives = 71/87 (81%)
Frame = +2
Query: 248 KERGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 427
K GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++S
Sbjct: 385 KHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLS 444
Query: 428 VRSSDRWKAQVIEALRRAKFKFPGRQK 508
VR D A EALRRAKFKFPGRQ+
Sbjct: 445 VRCRDANAAHAQEALRRAKFKFPGRQR 471
Score = 120 bits (288), Expect = 2e-27
Identities = 52/68 (76%), Positives = 60/68 (88%)
Frame = +3
Query: 54 KNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICC 233
KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEALEA RI C
Sbjct: 320 KNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEALEAARIAC 379
Query: 234 NKYLVKNA 257
NKY+ K+A
Sbjct: 380 NKYMAKHA 387
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +1
Query: 493 PRTSKVYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHG 627
P +V S KWGFT+++RDE+ KL+ EGR+ DG + HG
Sbjct: 467 PGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 420 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 328
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 141 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVK 251
T D P C +HL SD Y S E ++AG+ C L K
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQK 624
>05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517
Length = 208
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = -3
Query: 313 DADNVERVKSHADMELILSAFFTRYLLQQIR-----PASKASELSCSYSSDTKCTHSGKS 149
+ DN+ V AD L+++A +++Q + PA+ A+ C+ S TK H G+
Sbjct: 143 NCDNLPVVPLGADQPLVMAACKRAAVIKQQQQASSSPATAAAAAQCAVPSSTKAIHVGEE 202
Query: 148 STVA 137
+ ++
Sbjct: 203 AHIS 206
>10_08_0309 +
16666047-16666543,16666626-16666836,16666925-16667035,
16667130-16667918
Length = 535
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 405 ALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKSLRIK 521
A + + C G R++ + A+PSSSS SLR+K
Sbjct: 6 AQSAAAAACFATAGDARRAASVVAMPSSSSSATTSLRMK 44
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 374 GKPQGTVARVRIGQPIMSVRSSD 442
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/42 (23%), Positives = 26/42 (61%)
Frame = -1
Query: 678 RLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKL 553
+++ +D + +LPP ++ + +V+HN + + + + LLK+
Sbjct: 685 QIFFDDRNTSLPPDTRKAAYLSVMHNVSSTNRSG-YDALLKI 725
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +1
Query: 10 RSPXXAGQQDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCP 180
R+ A Q +TGT K + R G + L + V ++ P+ F AC W P
Sbjct: 199 RASKSAWSQSSTGTRKWMQYRPAGETSLTLPCQGVLNLIATGPTPMDVF--ACAWSP 253
>02_01_0254 - 1669461-1669590,1669833-1672318
Length = 871
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 687 VLIRLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLK 556
V +RL++ S PPS + F A + AA +AAL LL+
Sbjct: 24 VALRLFLHLTSAASPPSPHSTSFLARILAAAAAHDAALLPSLLR 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,524,436
Number of Sequences: 37544
Number of extensions: 500026
Number of successful extensions: 1412
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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