Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00573
(711 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 137 6e-33
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 136 1e-32
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 136 1e-32
At5g47870.1 68418.m05914 expressed protein 30 1.7
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 5.3
At4g24120.1 68417.m03462 transporter, putative similar to iron-p... 28 5.3
At2g18876.1 68415.m02201 expressed protein 27 9.3
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 137 bits (332), Expect = 6e-33
Identities = 65/92 (70%), Positives = 71/92 (77%)
Frame = +2
Query: 248 KERGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 427
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++S
Sbjct: 78 KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137
Query: 428 VRSSDRWKAQVIEALRRAKFKFPGRQKSTYQR 523
VR D EALRRAKFKFPGRQK R
Sbjct: 138 VRCKDNHGVHAQEALRRAKFKFPGRQKIIVSR 169
Score = 115 bits (277), Expect = 3e-26
Identities = 51/68 (75%), Positives = 58/68 (85%)
Frame = +3
Query: 54 KNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICC 233
K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +SSEALEA RI C
Sbjct: 13 KGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIAC 72
Query: 234 NKYLVKNA 257
NKY+VK+A
Sbjct: 73 NKYMVKSA 80
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/47 (46%), Positives = 29/47 (61%)
Frame = +1
Query: 493 PRTSKVYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 633
P K+ VS+KWGFTK+ R E+ KLR R+ DG ++ HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPL 206
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 136 bits (329), Expect = 1e-32
Identities = 65/92 (70%), Positives = 71/92 (77%)
Frame = +2
Query: 248 KERGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 427
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++S
Sbjct: 78 KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137
Query: 428 VRSSDRWKAQVIEALRRAKFKFPGRQKSTYQR 523
VR D EALRRAKFKFPGRQK R
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKIIVSR 169
Score = 115 bits (276), Expect = 4e-26
Identities = 51/68 (75%), Positives = 58/68 (85%)
Frame = +3
Query: 54 KNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICC 233
K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +SSEALEA RI C
Sbjct: 13 KGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSSEALEAARIAC 72
Query: 234 NKYLVKNA 257
NKY+VK+A
Sbjct: 73 NKYMVKSA 80
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/47 (46%), Positives = 31/47 (65%)
Frame = +1
Query: 493 PRTSKVYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 633
P K+ VS+KWGFTK+ R ++ KLR+E R+ DG ++ HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPL 206
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 136 bits (329), Expect = 1e-32
Identities = 65/92 (70%), Positives = 71/92 (77%)
Frame = +2
Query: 248 KERGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 427
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++S
Sbjct: 78 KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137
Query: 428 VRSSDRWKAQVIEALRRAKFKFPGRQKSTYQR 523
VR D EALRRAKFKFPGRQK R
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKIIVSR 169
Score = 115 bits (277), Expect = 3e-26
Identities = 51/68 (75%), Positives = 58/68 (85%)
Frame = +3
Query: 54 KNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICC 233
K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +SSEALEA RI C
Sbjct: 13 KGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIAC 72
Query: 234 NKYLVKNA 257
NKY+VK+A
Sbjct: 73 NKYMVKSA 80
Score = 54.4 bits (125), Expect = 7e-08
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = +1
Query: 493 PRTSKVYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 633
P K+ VS+KWGFTK+ R +F KLR+E R+ DG ++ HGPL
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPL 206
>At5g47870.1 68418.m05914 expressed protein
Length = 199
Score = 29.9 bits (64), Expect = 1.7
Identities = 27/122 (22%), Positives = 43/122 (35%)
Frame = +2
Query: 278 RMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQ 457
R++L PF + +N+ + C+G G+ G + V PI SS
Sbjct: 23 RIKLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRP 77
Query: 458 VIEALRRAKFKFPGRQKSTYQRSGVSQSMNVMSLRSCVKRAASLMTAALCSTARNMDLST 637
+IE LR K P ++ S + + R S C R++ S
Sbjct: 78 LIEILRDLNKKIPDNIVKSHDPPSTSAATSGFIPWYHANRMLSFYAPGWCGEVRDVIFSE 137
Query: 638 LG 643
G
Sbjct: 138 NG 139
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 177 SDEYEQLSSEALEAGRICCNKYLV 248
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At4g24120.1 68417.m03462 transporter, putative similar to
iron-phytosiderophore transporter protein yellow stripe
1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
OPT oligopeptide transporter protein
Length = 665
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 243 LVKNAERISSISA*DF-TLSTLSASIKCYHALELIGSRLGCVVRLASLRVL*HVFALDSP 419
L+K+ +S I DF T S K A ++IG+ +GC+V S + F + +P
Sbjct: 468 LIKSVVSVSCILMQDFKTAHYTMTSPKAMFASQMIGTVVGCIVTPLSFFLFYKAFDIGNP 527
Query: 420 S 422
+
Sbjct: 528 N 528
>At2g18876.1 68415.m02201 expressed protein
Length = 382
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 322 HFIDADNVERVKSHADMELILSAFFTRYLLQQIRPASKASELSCSYS 182
+F D DN+E + + L+ S F L P S A +C Y+
Sbjct: 27 NFADVDNLENCIKYLNQSLVTSGFSASLDLFATDPVSIARTCNCVYA 73
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,632,677
Number of Sequences: 28952
Number of extensions: 370771
Number of successful extensions: 1059
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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