Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00572X
(505 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 107 7e-25
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 107 7e-25
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 107 7e-25
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 41 9e-05
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 28 0.92
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 27 1.2
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 25 8.5
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 25 8.5
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 107 bits (258), Expect = 7e-25
Identities = 47/63 (74%), Positives = 57/63 (90%)
Frame = -3
Query: 440 RASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYH 261
R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+H
Sbjct: 127 RSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFH 186
Query: 260 KYR 252
KYR
Sbjct: 187 KYR 189
Score = 91.5 bits (217), Expect = 7e-20
Identities = 37/51 (72%), Positives = 45/51 (88%)
Frame = -2
Query: 255 QVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 103
+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KVGLIAA
Sbjct: 189 RVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAA 239
Score = 37.9 bits (84), Expect = 9e-04
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = -1
Query: 502 MPEGTIVSNLEEKMGDRGRM 443
MPEGTI+SN+EEK GDRG +
Sbjct: 106 MPEGTIISNVEEKAGDRGAL 125
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 107 bits (258), Expect = 7e-25
Identities = 47/63 (74%), Positives = 57/63 (90%)
Frame = -3
Query: 440 RASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYH 261
R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+H
Sbjct: 127 RSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFH 186
Query: 260 KYR 252
KYR
Sbjct: 187 KYR 189
Score = 91.5 bits (217), Expect = 7e-20
Identities = 37/51 (72%), Positives = 45/51 (88%)
Frame = -2
Query: 255 QVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 103
+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KVGLIAA
Sbjct: 189 RVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAA 239
Score = 37.9 bits (84), Expect = 9e-04
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = -1
Query: 502 MPEGTIVSNLEEKMGDRGRM 443
MPEGTI+SN+EEK GDRG +
Sbjct: 106 MPEGTIISNVEEKAGDRGAL 125
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 107 bits (258), Expect = 7e-25
Identities = 47/63 (74%), Positives = 57/63 (90%)
Frame = -3
Query: 440 RASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYH 261
R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+LKAGRA+H
Sbjct: 127 RSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFH 186
Query: 260 KYR 252
KYR
Sbjct: 187 KYR 189
Score = 91.5 bits (217), Expect = 7e-20
Identities = 37/51 (72%), Positives = 45/51 (88%)
Frame = -2
Query: 255 QVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 103
+VKRNCWP RGVAMNPV+HPHGGGNHQH+G ++TV R ++ G+KVGLIAA
Sbjct: 189 RVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAA 239
Score = 37.9 bits (84), Expect = 9e-04
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = -1
Query: 502 MPEGTIVSNLEEKMGDRGRM 443
MPEGTI+SN+EEK GDRG +
Sbjct: 106 MPEGTIISNVEEKAGDRGAL 125
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 41.1 bits (92), Expect = 9e-05
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = -2
Query: 234 PYVRGVAMNPVEHPHGGGNHQHIG 163
P VRG AMNP +HPHGGG + IG
Sbjct: 256 PTVRGTAMNPCDHPHGGGGGKSIG 279
Score = 25.4 bits (53), Expect = 4.9
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = -3
Query: 440 RASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRA 267
R++G+ A +I D K V+L SG ++ + ++ +G+V+ + + KAGR+
Sbjct: 194 RSAGSSARIIAF--DGKYAIVRLQSGEERKILDTSFATIGVVSNIYWQHRQLGKAGRS 249
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 27.9 bits (59), Expect = 0.92
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +1
Query: 136 CSSLDSGSLTYMLMVTTTVRMLYRVHGNTTYIWPAVTFDLYLWYALPAFKIGLSIRP 306
C+S SG LT + ++ TT ++L +GN Y++ V + L + + A +G+S+ P
Sbjct: 295 CAS-QSGQLTLLRLICTT-KIL---NGNPIYVYSFVPHKIRLTHLVDAPLLGMSVCP 346
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.5 bits (58), Expect = 1.2
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 310 PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPE 435
PAT+P F P F +L SGL V+ +P+
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPD 287
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 24.6 bits (51), Expect = 8.5
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 331 PLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARAYDLYHPFSLQD 477
PLLLD + S +V +ASG+ P+ KF DL F +
Sbjct: 135 PLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNE 183
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 24.6 bits (51), Expect = 8.5
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 387 TLSIRIVSNHSGEVSRGTCIRPLS--PIFSSRLLTMVPSGI 503
++ IRI S + S T +R LS PIF RLL P I
Sbjct: 7 SIPIRIQSLRRYQGSLKTSLRALSTRPIFEKRLLAETPFSI 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,669
Number of Sequences: 5004
Number of extensions: 42875
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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