Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00572X
(505 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 102 2e-22
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611... 31 0.69
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 1.6
01_01_0841 - 6564029-6564348,6564654-6564686,6564793-6565450,656... 29 2.8
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 28 3.7
06_01_0869 - 6616667-6616945,6618006-6619241 28 4.9
03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922 28 4.9
04_04_1680 + 35318330-35318693,35319789-35319877,35320082-353200... 27 6.5
02_01_0494 + 3580543-3580716 27 6.5
01_01_0185 - 1570942-1571178,1571525-1571656,1571737-1571816,157... 27 8.6
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 102 bits (244), Expect = 2e-22
Identities = 45/65 (69%), Positives = 55/65 (84%)
Frame = -3
Query: 446 YARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRA 267
+ARASG++A VI HNPD +R+KLPSGAKK++PSS R M+G VAGGGR +KP+LKAG A
Sbjct: 126 FARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNA 185
Query: 266 YHKYR 252
YHKYR
Sbjct: 186 YHKYR 190
Score = 97.5 bits (232), Expect = 5e-21
Identities = 42/51 (82%), Positives = 45/51 (88%)
Frame = -2
Query: 255 QVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 103
+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R G+KVGLIAA
Sbjct: 190 RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 505 AMPEGTIVSNLEEKMGDRG 449
++PEG +V N+E +GDRG
Sbjct: 106 SVPEGAVVCNVEHHVGDRG 124
>06_01_0811 -
6113491-6113925,6114079-6114185,6114569-6114788,
6115112-6115199,6115301-6115431,6115924-6116099,
6116465-6116529,6117014-6117094,6117219-6117358,
6117446-6117532,6117614-6117827,6118102-6118260,
6118860-6118936,6119629-6119796
Length = 715
Score = 30.7 bits (66), Expect = 0.69
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 312 WRWTY*QTYFESWKGIPQVQ 253
W WTY T+F SW +P +Q
Sbjct: 70 WSWTYWSTFFLSWSIVPTLQ 89
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 1.6
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -2
Query: 435 LWKLRHCDWT 406
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>01_01_0841 -
6564029-6564348,6564654-6564686,6564793-6565450,
6565530-6565694,6565789-6565878,6565982-6566182,
6566525-6566737,6566835-6567077
Length = 640
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 222 GVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVG 115
G+A N PHG NHQH ++ T++ K G
Sbjct: 524 GIAANHTSLPHGA-NHQHASPVEIEQKATASWEKDG 558
>10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 252 PVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSRR*LYSCTLSIRIVSNHS 419
P + CPS ++ +++T + +H S +QN L R + SC IR+++ S
Sbjct: 1095 PSVAPCPSDIVLKWFDSTTMEDLVNHLSSNGYQNDLLHRAKVASCLCIIRLLTKLS 1150
>06_01_0869 - 6616667-6616945,6618006-6619241
Length = 504
Score = 27.9 bits (59), Expect = 4.9
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +1
Query: 169 MLMVTTTVRMLYRVHGNTT-YIWPAVTFDLYLWYALPAFKIGLSIRPPPATIPTMPLLLD 345
+L V+ V R + + +++ VT +YL PAF++ + RPPP + L
Sbjct: 226 VLAVSVVVASAARAAADPSRHVFHVVTAPMYL----PAFRVWFARRPPPLGVHVQLLAYS 281
Query: 346 GRTFLAPDGSFTLVRLASG 402
FL S L ++ +G
Sbjct: 282 DFPFLNETSSPVLRQIEAG 300
>03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922
Length = 147
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 404 NPDAKRTRVKLPS--GAKKVLPSSNRGMVGIVAGGGRIDKPI 285
+P + RTR PS GA K ++ +G+ GG R+ PI
Sbjct: 45 SPTSTRTRTSTPSAPGAAKAASPNHVRAIGVREGGARLVGPI 86
>04_04_1680 +
35318330-35318693,35319789-35319877,35320082-35320087,
35320638-35321300
Length = 373
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 345 WQNLLGSRR*LYSCTLSIRIVSNHSGEVSRGTCIRPLSPIFSSRLL 482
W + L SR + CT S+ + G ++R C IFS +L
Sbjct: 107 WDSSLSSRYGPFQCTTSVPAMRYTHGPIARYACCDSTLQIFSIEVL 152
>02_01_0494 + 3580543-3580716
Length = 57
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 232 WPAVTFDLYLWYALPAFKIGLSIRPPPA 315
WPA F YL++ + + + L +R P A
Sbjct: 30 WPAAAFAAYLFWVVASAAVALFVRRPAA 57
>01_01_0185 -
1570942-1571178,1571525-1571656,1571737-1571816,
1571919-1572048,1572136-1572268,1572376-1572497,
1572612-1572749,1572898-1572918,1573493-1573678,
1574576-1574713,1575068-1575532
Length = 593
Score = 27.1 bits (57), Expect = 8.6
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +1
Query: 235 PAVTFDLYLWYALPAFKIGLSIRPP-PATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCP 411
P VTFDL++ A P + A PT+ L P GS T+ + A L P
Sbjct: 381 PPVTFDLFMRAAFPVSSARVKATERFEAAYPTIKEL----ALAGPPGSKTVKQAAQQLLP 436
Query: 412 ITVAKFPEARA 444
+ V E A
Sbjct: 437 LCVKAMQENNA 447
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,601,021
Number of Sequences: 37544
Number of extensions: 326633
Number of successful extensions: 1083
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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