Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00572X
(505 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 115 2e-26
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 65 4e-11
SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.31
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 31 0.54
SB_54819| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.94
SB_52855| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_51926| Best HMM Match : Na_Pi_cotrans (HMM E-Value=0) 28 3.8
SB_18519| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_52727| Best HMM Match : Plasmodium_HRP (HMM E-Value=2) 27 6.6
SB_53910| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05) 27 8.8
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 27 8.8
SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088) 27 8.8
SB_35075| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05) 27 8.8
SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0) 27 8.8
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42) 27 8.8
SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05) 27 8.8
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 115 bits (277), Expect = 2e-26
Identities = 52/65 (80%), Positives = 59/65 (90%)
Frame = -3
Query: 443 ARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAY 264
AR SGN+ATVI HN + KRTRVKLPSG KKV+PSSNR +VGIVAGGGRIDKP+LKAGRAY
Sbjct: 127 ARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRALVGIVAGGGRIDKPMLKAGRAY 186
Query: 263 HKYRS 249
HKY++
Sbjct: 187 HKYKA 191
Score = 99.5 bits (237), Expect = 1e-21
Identities = 43/51 (84%), Positives = 45/51 (88%)
Frame = -2
Query: 255 QVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 103
+ KRNCWP VRGVAMNPVEHPHGGGNHQHIG STV+R T AGRKVGLIAA
Sbjct: 190 KAKRNCWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDTPAGRKVGLIAA 240
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1
Query: 502 MPEGTIVSNLEEKMGDRGRM 443
MPEGTI+S++EEK GDRGR+
Sbjct: 107 MPEGTIISSVEEKTGDRGRL 126
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 64.9 bits (151), Expect = 4e-11
Identities = 29/39 (74%), Positives = 33/39 (84%)
Frame = -3
Query: 443 ARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGM 327
AR SGN+ATVI HN + KRTRVKLPSG KKV+PSSNR +
Sbjct: 85 ARTSGNYATVISHNVEKKRTRVKLPSGIKKVIPSSNRAL 123
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1
Query: 502 MPEGTIVSNLEEKMGDRGRM 443
MPEGTI+S++EEK GDRGR+
Sbjct: 65 MPEGTIISSVEEKTGDRGRL 84
>SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 31.9 bits (69), Expect = 0.31
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +2
Query: 65 VSVLPPRILPVLRAAIRPTLRPADVPLLTVEALPIC*WLPPP 190
V VL P + P+LR +RP LRP P+L L W PP
Sbjct: 410 VGVLHPMLRPMLRPMLRPMLRPMLRPMLR-PMLQYKLWCQPP 450
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 31.1 bits (67), Expect = 0.54
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 307 PPATIPTMPLLLDGRTFLAPDGSFT 381
P AT + L+LD TFL PDGS T
Sbjct: 135 PAATTTYLNLILDSETFLEPDGSAT 159
>SB_54819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 30.3 bits (65), Expect = 0.94
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Frame = +3
Query: 180 YHHREDAL--QGSWQHHVHMA-----SSYV*PVLVVCPSSFQNRFVNTSTSSNNTDH 329
YHHR + S HH H+ SSY ++V+ PSS+ +R + S ++ H
Sbjct: 103 YHHRHMTIVISPSSYHHRHITIAISPSSYRHTIIVISPSSYHHRHITIVRSPSSYHH 159
>SB_52855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Frame = +3
Query: 180 YHHREDAL--QGSWQHHVHMA-----SSYV*PVLVVCPSSFQNRFVNTSTSSNNTDH 329
YHHR + S HH H+ SSY ++V+ PSS+ +R + S + H
Sbjct: 103 YHHRHMTIVISPSSYHHRHITIAISPSSYRHTIIVILPSSYHHRHITIVISPPSYHH 159
>SB_51926| Best HMM Match : Na_Pi_cotrans (HMM E-Value=0)
Length = 652
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +1
Query: 214 GNTT--YIWPAVTFDLYLWYALPAFKIGLSI 300
GNTT Y W AV + + +++ LPA GLS+
Sbjct: 544 GNTTARYRWFAVAYLILMFFLLPAAVFGLSL 574
>SB_18519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 71 VLPPRILPVLRAAIRPTLRPADVPLLTVEALPIC*WLPPP 190
+L P + P+LR +RP LRP P+L + W PP
Sbjct: 1 MLRPMLRPMLRPMLRPMLRPMLRPMLQYKL-----WCQPP 35
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 443 ARASGNF--ATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGI 318
AR +G+F T + D RTR P KKVL ++N G + I
Sbjct: 1470 ARRTGSFDNLTSMLRLQDTPRTRTLAPISVKKVLTATNPGQLAI 1513
>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 304 PPPATIPTMPLLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPE 435
PPP IP + + + GR+F+ + +V SG P+T+ K E
Sbjct: 361 PPPIDIPNLMIPIRGRSFV----NDKIVEEKSGDSPLTIKKTSE 400
>SB_13966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 71 VLPPRILPVLRAAIRPTLRPADVPLLTVEALPI 169
++ P LP+ I PT P + P++ ALPI
Sbjct: 147 IIYPTALPITSPIIYPTALPINPPIIYPTALPI 179
>SB_52727| Best HMM Match : Plasmodium_HRP (HMM E-Value=2)
Length = 332
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -2
Query: 258 VQVKRNCWPYVRGVAMNPVEHPHGGG-NHQHIGKASTVKRG 139
VQ + N + G N H HGGG N +H G S V+ G
Sbjct: 236 VQNELNHTSFSEGQNTNCASHSHGGGQNAEHRGCHSDVQNG 276
>SB_53910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 378 YSCTLSIRIVSNHSGEVSRG 437
Y+CTL+I + H GE+ RG
Sbjct: 11 YACTLNINVGVKHPGEMFRG 30
>SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05)
Length = 275
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 273 SSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 368
+++ N VNTST+S +DH +V NL SR
Sbjct: 198 TTYPNVIVNTSTASGLSDHLAVIFEVNLKPSR 229
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 27.1 bits (57), Expect = 8.8
Identities = 21/58 (36%), Positives = 30/58 (51%)
Frame = -3
Query: 443 ARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGR 270
ARA+G A +I + V+LPS +K + S VG V+ R ++ I KAGR
Sbjct: 143 ARAAGTSAQLIRKTNET--AVVRLPSKVEKEVSSKCLASVGRVSNIERKNRVIGKAGR 198
>SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088)
Length = 321
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 273 SSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 368
+++ N VNTST+S +DH +V NL SR
Sbjct: 150 TTYPNVIVNTSTASGLSDHLAVIFEVNLKPSR 181
>SB_35075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1184
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -2
Query: 354 GSAIKQQRHGRYCCWRWTY*QTYFESWKGIPQV 256
G+A+K + RY C W Y WK QV
Sbjct: 885 GTAVKGHGYTRYFCDFWKYTAQVLPLWKSTAQV 917
>SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05)
Length = 249
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 273 SSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 368
+++ N VNTST+S +DH +V NL SR
Sbjct: 198 TTYPNVIVNTSTASGLSDHLAVIFEVNLKPSR 229
>SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 801
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 273 SSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 368
+++ N VNTST+S +DH +V NL SR
Sbjct: 92 TTYPNVIVNTSTASGLSDHLAVIFEVNLKPSR 123
>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
Length = 426
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +1
Query: 283 KIGLS-IRPPPATI--PTMPLLLDGRTFLAPDGSFT 381
++GLS I+PPP + PT+P + G P GS T
Sbjct: 237 RLGLSNIKPPPPPVPPPTIPSVPPGSETYVPPGSAT 272
>SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05)
Length = 273
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 273 SSFQNRFVNTSTSSNNTDHASVA*WQNLLGSR 368
+++ N VNTST+S +DH +V NL SR
Sbjct: 198 TTYPNVIVNTSTASGLSDHLAVIFEVNLKPSR 229
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,273,279
Number of Sequences: 59808
Number of extensions: 357869
Number of successful extensions: 902
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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