Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00572X
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)             101   3e-22
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso...   101   4e-22
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso...    99   8e-22
At4g14250.1 68417.m02198 UBX domain-containing protein low simil...    45   3e-05
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim...    40   0.001
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim...    40   0.001
At5g52600.1 68418.m06531 myb family transcription factor (MYB82)...    28   4.1  
At4g33410.1 68417.m04748 signal peptide peptidase family protein...    27   5.4  
At4g30000.1 68417.m04268 dihydropterin pyrophosphokinase, putati...    27   9.5  
At3g03860.1 68416.m00398 expressed protein                             27   9.5  
At1g77760.1 68414.m09053 nitrate reductase 1 (NR1) identical to ...    27   9.5  
At1g53170.1 68414.m06025 ethylene-responsive element-binding fac...    27   9.5  
At1g26480.1 68414.m03229 14-3-3 protein GF14 iota (GRF12) identi...    27   9.5  

>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 
          Length = 258

 Score =  101 bits (242), Expect = 3e-22
 Identities = 44/64 (68%), Positives = 54/64 (84%)
 Frame = -3

Query: 443 ARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAY 264
           ARASG++A VI HNPD+  TR+KLPSG+KK++PS  R M+G VAGGGR +KP+LKAG AY
Sbjct: 127 ARASGDYAIVIAHNPDSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAY 186

Query: 263 HKYR 252
           HKYR
Sbjct: 187 HKYR 190



 Score = 93.5 bits (222), Expect = 7e-20
 Identities = 41/51 (80%), Positives = 44/51 (86%)
 Frame = -2

Query: 255 QVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 103
           +VKRN WP VRGVAMNPVEHPHGGGNHQHIG ASTV+R    G+KVGLIAA
Sbjct: 190 RVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA 240



 Score = 28.7 bits (61), Expect = 2.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 505 AMPEGTIVSNLEEKMGDRG 449
           ++PEG +V N+E  +GDRG
Sbjct: 106 SIPEGAVVCNVEHHVGDRG 124


>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
           protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
          Length = 260

 Score =  101 bits (241), Expect = 4e-22
 Identities = 44/65 (67%), Positives = 55/65 (84%)
 Frame = -3

Query: 443 ARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAY 264
           ARASG++A VI HNP++  TRVKLPSG+KK+LPS+ R M+G VAGGGR +KP LKAG AY
Sbjct: 128 ARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPFLKAGNAY 187

Query: 263 HKYRS 249
           HKY++
Sbjct: 188 HKYKA 192



 Score = 96.7 bits (230), Expect = 8e-21
 Identities = 42/51 (82%), Positives = 44/51 (86%)
 Frame = -2

Query: 255 QVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 103
           + KRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R  SAG KVG IAA
Sbjct: 191 KAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHASTVRRDKSAGAKVGQIAA 241



 Score = 27.5 bits (58), Expect = 5.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 505 AMPEGTIVSNLEEKMGDRGRM 443
           ++PEG ++ N+E  +GDRG +
Sbjct: 107 SIPEGAVICNVELHVGDRGAL 127


>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
           protein L8, cytosolic, tomato, PIR1:R5TOL8
          Length = 258

 Score =   99 bits (238), Expect = 8e-22
 Identities = 43/65 (66%), Positives = 54/65 (83%)
 Frame = -3

Query: 446 YARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRA 267
           +ARASG++A VI HNPD   +R+KLPSG+KK++PS  R M+G VAGGGR +KP+LKAG A
Sbjct: 126 FARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNA 185

Query: 266 YHKYR 252
           YHKYR
Sbjct: 186 YHKYR 190



 Score = 97.9 bits (233), Expect = 3e-21
 Identities = 42/51 (82%), Positives = 45/51 (88%)
 Frame = -2

Query: 255 QVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 103
           +VKRNCWP VRGVAMNPVEHPHGGGNHQHIG ASTV+R    G+KVGLIAA
Sbjct: 190 RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGKKVGLIAA 240



 Score = 28.3 bits (60), Expect = 3.1
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 505 AMPEGTIVSNLEEKMGDRG 449
           ++PEG ++ N+E  +GDRG
Sbjct: 106 SIPEGAVICNVEHHVGDRG 124


>At4g14250.1 68417.m02198 UBX domain-containing protein low
           similarity to 60S ribosomal protein L2 [Nicotiana
           tabacum] GI:9230281; contains Pfam profile PF00789: UBX
           domain
          Length = 724

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 19/27 (70%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
 Frame = -2

Query: 261 QVQVKRNCWPYVRGVAM-NPVEHPHGG 184
           ++ +KRN W  VRGVAM NPVEHPHGG
Sbjct: 411 KLMIKRNMWAKVRGVAMMNPVEHPHGG 437


>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = -2

Query: 234 PYVRGVAMNPVEHPHGGG 181
           P VRGVAMNP +HPHGGG
Sbjct: 152 PKVRGVAMNPCDHPHGGG 169



 Score = 31.5 bits (68), Expect = 0.33
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -3

Query: 440 RASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRA 267
           RA+G  A ++   P   +  +KLPSG  K + +  R  +G V+      K + KAG++
Sbjct: 89  RAAGTNAKIL-KEPAKGKCLIKLPSGDTKWINAKCRATIGTVSNPSHGTKKLYKAGQS 145


>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = -2

Query: 234 PYVRGVAMNPVEHPHGGG 181
           P VRGVAMNP +HPHGGG
Sbjct: 152 PKVRGVAMNPCDHPHGGG 169



 Score = 31.5 bits (68), Expect = 0.33
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -3

Query: 440 RASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRA 267
           RA+G  A ++   P   +  +KLPSG  K + +  R  +G V+      K + KAG++
Sbjct: 89  RAAGTNAKIL-KEPAKGKCLIKLPSGDTKWINAKCRATIGTVSNPSHGTKKLYKAGQS 145


>At5g52600.1 68418.m06531 myb family transcription factor (MYB82)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to  cDNA putative transcription factor
           (MYB82) mRNA, partial cds GI:3941515
          Length = 201

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 252 VKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGR 124
           VKR  W     + +      HG GN   I + S +KRG  + R
Sbjct: 12  VKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCR 54


>At4g33410.1 68417.m04748 signal peptide peptidase family protein
           contains Pfam domain PF04258: Membrane protein of
           unknown function (DUF435)
          Length = 372

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 256 YLWYALPAFKIGL 294
           Y+WYALP + IGL
Sbjct: 301 YIWYALPGYAIGL 313


>At4g30000.1 68417.m04268 dihydropterin pyrophosphokinase, putative
           / dihydropteroate synthase, putative / DHPS, putative
           similar to dihydropterin pyrophosphokinase
           /dihydropteroate synthase [Pisum sativum]
           gi|1934972|emb|CAA69903
          Length = 554

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 18/80 (22%), Positives = 41/80 (51%)
 Frame = +3

Query: 225 VHMASSYV*PVLVVCPSSFQNRFVNTSTSSNNTDHASVA*WQNLLGSRR*LYSCTLSIRI 404
           +H +S +  P L  C S+F +   +T+    +T+H  V    + +G+R  + +   ++R+
Sbjct: 55  LHCSSLFSPPAL--CNSAFSSSATSTTIEVQSTEHEVVIALGSNIGNR--MNNFREALRL 110

Query: 405 VSNHSGEVSRGTCIRPLSPI 464
           +      V+R +C+   +P+
Sbjct: 111 MKRGGICVTRHSCLYETAPV 130


>At3g03860.1 68416.m00398 expressed protein
          Length = 300

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = +1

Query: 265 YALPAFKIGLSIRPPPATIPTMPLLLDG----RTFLAPDG-SFTLVRLASGLCPITVAKF 429
           Y    F+  L  + PP+  PT P+ +DG    R   +  G ++  V   +  CP + A  
Sbjct: 34  YEFELFRFDLEAKCPPSLYPTPPIEVDGDSLDRLMASQHGNAYMSVLFYASWCPFSRAVR 93

Query: 430 PE 435
           P+
Sbjct: 94  PK 95


>At1g77760.1 68414.m09053 nitrate reductase 1 (NR1) identical to
           SP|P11832 Nitrate reductase 1 (formerly EC 1.6.6.1)
           (NR1){Arabidopsis thaliana}
          Length = 917

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
 Frame = -2

Query: 276 WKGIPQVQVKRNCWPYV-RGVAMN-----PVEHPHGGGN 178
           WKGIP  ++ R C  Y  RG A+N       + P GGG+
Sbjct: 226 WKGIPLSEILRRCGIYSRRGGALNVCFEGAEDLPGGGGS 264


>At1g53170.1 68414.m06025 ethylene-responsive element-binding factor
           8 / ERF transcription factor 8 (ERF8) identical to ERF
           transcription factor 8 GI:10567108 from [Arabidopsis
           thaliana]
          Length = 185

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -3

Query: 440 RASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPI 285
           +A  NF  ++G +P    T V  P+ A+ + P      +G   GGG   + I
Sbjct: 81  KAKTNFGVIVGSSPTQSSTVVDSPTAARFITPPHLELSLG---GGGACRRKI 129


>At1g26480.1 68414.m03229 14-3-3 protein GF14 iota (GRF12) identical
           to 14-3-3 protein GF14iota GI:12963453 from [Arabidopsis
           thaliana]
          Length = 268

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 427 TSPL*LDTILMLSVQE*SYRLEPRRFCHQATEAWSVLLLEVDVLT 293
           T P+ L   L  SV        P R CH A +A+   + E+D L+
Sbjct: 172 THPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLS 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,181,676
Number of Sequences: 28952
Number of extensions: 242175
Number of successful extensions: 668
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)