Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00570
         (603 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    62   5e-12
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   2.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.0  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 61.7 bits (143), Expect = 5e-12
 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
 Frame = +1

Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXX 435
           +HGD  Q ERE  +  F+TG  +VL+ T + ARG+D++ V  VINYDLP + + Y     
Sbjct: 439 IHGDRYQSEREKALLDFKTGHRKVLVATGVAARGLDIKDVQHVINYDLPKSIDEYVHRIG 498

Query: 436 XXXXXXXXXXXXNFVTE-ADRRATEDIEDFYHTSIVEMP 549
                       +F  E  DR    D+      +  E+P
Sbjct: 499 RTGRVGNKGKATSFFDEDQDRNLASDLAKILSQAKQEIP 537


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 382 RRKLAVHQYHVPINQW*SRHEKSQYET 302
           RRK A  +    +  W + H+K+ Y T
Sbjct: 87  RRKNATRESTATLKAWLNEHKKNPYPT 113


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 481 TEADRRATEDIEDFYHTSIVEMPSDVANLI 570
           ++A   A E   +FY+     +PS +AN++
Sbjct: 860 SDAYTHAPEGFNEFYNQRRRWVPSTIANIM 889


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 481 TEADRRATEDIEDFYHTSIVEMPSDVANLI 570
           ++A   A E   +FY+     +PS +AN++
Sbjct: 860 SDAYTHAPEGFNEFYNQRRRWVPSTIANIM 889


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 481 TEADRRATEDIEDFYHTSIVEMPSDVANLI 570
           ++A   A E   +FY+     +PS +AN++
Sbjct: 860 SDAYTHAPEGFNEFYNQRRRWVPSTIANIM 889


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 481 TEADRRATEDIEDFYHTSIVEMPSDVANLI 570
           ++A   A E   +FY+     +PS +AN++
Sbjct: 860 SDAYTHAPEGFNEFYNQRRRWVPSTIANIM 889


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,794
Number of Sequences: 336
Number of extensions: 2926
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)