Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00570
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 143 2e-35
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 130 2e-31
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 68 9e-13
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 68 9e-13
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 67 2e-12
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 66 3e-12
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 61 1e-10
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 61 1e-10
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 60 2e-10
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 59 6e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 54 1e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 54 1e-08
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 53 3e-08
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 52 6e-08
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 49 6e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 48 8e-07
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 48 1e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 45 1e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 43 3e-05
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 41 2e-04
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 40 2e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 39 5e-04
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 39 6e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 38 9e-04
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 33 0.032
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 33 0.042
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 32 0.056
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 32 0.056
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 27 2.1
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 27 2.8
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|... 25 6.4
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 25 6.4
SPBC17D11.03c |||conserved fungal protein|Schizosaccharomyces po... 25 8.5
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 25 8.5
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 25 8.5
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 8.5
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 143 bits (347), Expect = 2e-35
Identities = 63/84 (75%), Positives = 75/84 (89%)
Frame = +2
Query: 2 PDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAV 181
P DVLEV+ FMRDP+RILV+K+ELTLEGIKQFY+A+E EEWKL+TLCDLY+T+++ QAV
Sbjct: 203 PQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTVTQAV 262
Query: 182 IFCNNRRKVDWLTESMHLRDFTVS 253
IFCN RRKVDWLTE + RDFTVS
Sbjct: 263 IFCNTRRKVDWLTEQLTERDFTVS 286
Score = 130 bits (314), Expect = 2e-31
Identities = 63/105 (60%), Positives = 74/105 (70%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXX 435
MHGDMDQ +R+ +M +FRTGSSR+LITTDLLARGIDVQQVS VINYDLP+NRENY
Sbjct: 288 MHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIG 347
Query: 436 XXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDVANLI 570
NFVT D R +IE FY+T I EMP ++A+LI
Sbjct: 348 RGGRFGRKGVSINFVTNDDVRMMREIEQFYNTHIEEMPMNIADLI 392
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 130 bits (314), Expect = 2e-31
Identities = 57/84 (67%), Positives = 72/84 (85%)
Frame = +2
Query: 2 PDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAV 181
P DVLE++ F +PVRILV+++ELTLEG+KQ++IA+E EEWK +TLCDLYDTL+I QAV
Sbjct: 205 PQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAV 264
Query: 182 IFCNNRRKVDWLTESMHLRDFTVS 253
IFCN+RRKVDWLTE M +FTV+
Sbjct: 265 IFCNSRRKVDWLTEKMREANFTVT 288
Score = 116 bits (279), Expect = 3e-27
Identities = 56/105 (53%), Positives = 69/105 (65%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXX 435
MHG+M Q+ER+ IM+ FR G+SRVLI TD+ ARGIDVQQVS VINYDLP+NRENY
Sbjct: 290 MHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIG 349
Query: 436 XXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDVANLI 570
NFVT D R DIE +Y T I EMP ++ +++
Sbjct: 350 RSGRFGRKGVAINFVTNEDVRILRDIEQYYSTVIDEMPMNIGDMV 394
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 68.1 bits (159), Expect = 9e-13
Identities = 39/115 (33%), Positives = 53/115 (46%)
Frame = +1
Query: 247 CICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXX 426
C H M Q R + FR G R L+ +DLL RGID+Q V+ VIN+D P N E Y
Sbjct: 308 CFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLH 367
Query: 427 XXXXXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDVANLI*GAYIFP 591
+F++ ADR IE+ T I +P + + Y+FP
Sbjct: 368 RIGRSGRFGHRGLAISFISWADRFNLYRIENELGTEIQPIPPSIDPSL---YVFP 419
Score = 44.4 bits (100), Expect = 1e-05
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = +2
Query: 68 EELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNNRRKVDWLTESM 229
+ELTL G+ Q+Y ++ E K+ L L+ L I Q++IFCN+ +V+ L + +
Sbjct: 249 DELTLRGVTQYYAFVD-ESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKI 301
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 68.1 bits (159), Expect = 9e-13
Identities = 36/110 (32%), Positives = 64/110 (58%), Gaps = 9/110 (8%)
Frame = +1
Query: 253 CMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNR------E 414
C+ G+++ +R+ IM FR G+S+VL+TT+++ARGIDV QV+ V+NYD+P ++ +
Sbjct: 381 CLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQ 440
Query: 415 NYXXXXXXXXXXXXXXXXXNFVTEADRRATED---IEDFYHTSIVEMPSD 555
Y NFV D+++ E+ I++++ I +P+D
Sbjct: 441 TYLHRIGRTGRFGRVGVSINFV--HDKKSWEEMNAIQEYFQRPITRVPTD 488
Score = 52.0 bits (119), Expect = 6e-08
Identities = 25/67 (37%), Positives = 39/67 (58%)
Frame = +2
Query: 53 ILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNNRRKVDWLTESMH 232
I ++ EEL++EGIKQ Y+ + EE K L +LY L+I Q++IFC + + + M
Sbjct: 314 IRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMT 373
Query: 233 LRDFTVS 253
TV+
Sbjct: 374 ADGHTVA 380
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 66.9 bits (156), Expect = 2e-12
Identities = 26/57 (45%), Positives = 41/57 (71%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+ +HGD Q ER+ ++ +FRTG S +++ TD+ +RGIDV+ ++ V NYD P N E+Y
Sbjct: 397 LAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDY 453
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 66.5 bits (155), Expect = 3e-12
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXX 429
IC+HG + Q ER + F+ R+ + TD+ RGID+++V+ VINYD+P + ++Y
Sbjct: 323 ICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHR 382
Query: 430 XXXXXXXXXXXXXXNF-VTEADRRATEDIEDFYHTSIVEMPSDV 558
F +E D + + I++ + +I E+P ++
Sbjct: 383 VGRAGRFGTKGLAITFSSSEEDSQILDKIQERFEVNITELPDEI 426
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 61.3 bits (142), Expect = 1e-10
Identities = 31/96 (32%), Positives = 50/96 (52%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXX 435
+H +M QRER + +FR ++++L+ TD+ +RG+D+ V VIN+DLP + ++Y
Sbjct: 288 LHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVG 347
Query: 436 XXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVE 543
+ VTE D IED T + E
Sbjct: 348 RTARAGRSGESISIVTERDVDLVHAIEDRVGTKLSE 383
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 60.9 bits (141), Expect = 1e-10
Identities = 36/104 (34%), Positives = 50/104 (48%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXX 435
+HG++ Q +RE + +FR G VLI TDLLARGID V VIN+D P + +Y
Sbjct: 318 IHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIG 377
Query: 436 XXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDVANL 567
F T+ D + I +S E+P+ V L
Sbjct: 378 RTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSSGCEVPNWVMAL 421
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 60.1 bits (139), Expect = 2e-10
Identities = 24/55 (43%), Positives = 40/55 (72%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+HGD QRERE + FR+G + +++ T + +RG+D+ V+ VINYDLP++ ++Y
Sbjct: 460 IHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDY 514
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 58.8 bits (136), Expect = 6e-10
Identities = 29/104 (27%), Positives = 49/104 (47%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXX 435
+HG DQ +R+ + ++ G VLI T ++ARG+DV+ + V+NYD P++ E+Y
Sbjct: 698 IHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVG 757
Query: 436 XXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDVANL 567
F+T + DI S +P ++ L
Sbjct: 758 RTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKELQTL 801
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 54.4 bits (125), Expect = 1e-08
Identities = 22/57 (38%), Positives = 37/57 (64%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
I +HG + Q R + +F++G+ L+ TD+ ARG+D+ V VINYD+P++ + Y
Sbjct: 313 IPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAY 369
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 54.4 bits (125), Expect = 1e-08
Identities = 21/59 (35%), Positives = 37/59 (62%)
Frame = +1
Query: 244 YCICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+ + +HG Q +RE + Q R ++ +L+ TD+ RGID+ VS V+NY++ + E+Y
Sbjct: 542 HAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDY 600
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 53.2 bits (122), Expect = 3e-08
Identities = 24/86 (27%), Positives = 39/86 (45%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXX 435
+HG + Q +R + FR G L+ TD+ +RGID++ + VINY+ P+ E Y
Sbjct: 534 IHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVG 593
Query: 436 XXXXXXXXXXXXNFVTEADRRATEDI 513
E DR+ + +
Sbjct: 594 RTARAGRSGRAITLAGEGDRKVLKGV 619
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 52.0 bits (119), Expect = 6e-08
Identities = 23/55 (41%), Positives = 33/55 (60%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+HGDM Q R + F++G VL+ TD+ ARG+D+ +V VIN P E+Y
Sbjct: 446 IHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDY 500
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 48.8 bits (111), Expect = 6e-07
Identities = 23/58 (39%), Positives = 34/58 (58%)
Frame = +1
Query: 247 CICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
C + + ER+ I+ +F TG +L+ +DL+ARGIDV VINYD P + +Y
Sbjct: 464 CGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSY 521
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 48.4 bits (110), Expect = 8e-07
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+H +DQ++R + +F+ VL+ TD+ ARGID+ V+ VI+Y +P + Y
Sbjct: 419 LHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMY 473
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 48.0 bits (109), Expect = 1e-06
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLP 402
++G +DQ R + FR G + +L+ TD+ +RGID+ ++ VINYD P
Sbjct: 376 IYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFP 424
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/56 (17%), Positives = 28/56 (50%)
Frame = +2
Query: 2 PDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 169
P +++ ++ ++DPV + + E ++ + +++ E + LC L D + +
Sbjct: 255 PRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQDIIKL 310
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +1
Query: 247 CICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
C +H + +R I FR S +L TD++ARG+D ++ V+ PSN ++Y
Sbjct: 320 CFILHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDY 377
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 43.2 bits (97), Expect = 3e-05
Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGS---SRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXX 426
+HG + Q+ R + F + S +L+ TD+ ARG+D+ V V+ YD P + ++Y
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
Query: 427 XXXXXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDVANLI 570
F+ + ++ +I+E P+ + L+
Sbjct: 533 RIGRTARAGHNGAAIMFLLPKESEYINLLKSSVSANILEQPNGPSGLL 580
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+HG Q R + +F + VL TD++ARG+D V VI D P + + Y
Sbjct: 315 LHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTY 369
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+HG Q+ R +F +L+ T++ ARG+D+ V ++ YD P + +Y
Sbjct: 366 LHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDY 420
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 39.1 bits (87), Expect = 5e-04
Identities = 13/25 (52%), Positives = 22/25 (88%)
Frame = +1
Query: 346 LARGIDVQQVSCVINYDLPSNRENY 420
+ARG+D + V+CV+N+D+PSN ++Y
Sbjct: 386 VARGLDFENVACVLNFDMPSNTKSY 410
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 38.7 bits (86), Expect = 6e-04
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = +1
Query: 259 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
H +++ ER+ I ++++GS ++++ T G+D V VI++ P + E Y
Sbjct: 774 HAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGY 827
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 38.3 bits (85), Expect = 9e-04
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFRTGSSR-VLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+ +HG Q R +F+ + + VL TTD+ +RG+D+ V V+ D P + +++
Sbjct: 286 VALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSF 343
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 33.1 bits (72), Expect = 0.032
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 268 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 396
M Q+ + ++QF+ G LI T + G+D+ +V +I YD
Sbjct: 476 MSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYD 518
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 32.7 bits (71), Expect = 0.042
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 268 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSN 408
M+Q +++ + QFR G L+ T + G+D+ +I YD S+
Sbjct: 515 MNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSS 561
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 32.3 bits (70), Expect = 0.056
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 387
+ G+ + ERE +++ FR VL+ +L G D+ + C++
Sbjct: 295 LFGETNDSERETLIQDFRKKKFPVLVNCMVLTEGTDIPNIDCLM 338
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 32.3 bits (70), Expect = 0.056
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 268 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDL 399
M R ++ + +F+TG VLI T + GIDV + VI +++
Sbjct: 407 MTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNI 450
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 35 MRDPVRILVQKEELTLEGIKQFYIAIELEEW 127
+ DP R V+KE+LT G+ + A + + W
Sbjct: 65 LTDPARNFVEKEDLTALGVNVYNNADDWKNW 95
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +2
Query: 119 EEWKLETLCDLYDTLSIAQAVI--FCNNRRKVDW 214
+EWKL+ + D YD ++ QAV +R + DW
Sbjct: 143 DEWKLDPVYDYYD-YTLVQAVYSSLVKHREQKDW 175
>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 464
Score = 25.4 bits (53), Expect = 6.4
Identities = 7/26 (26%), Positives = 18/26 (69%)
Frame = -3
Query: 223 FSEPIHLATVVAENYSLCNRQCIIQV 146
+ + +++ T ++ N++ CN CI+Q+
Sbjct: 316 YHQVLNIGTTLSINHNWCNASCILQM 341
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 494 GEPLKILRTSTTLVSLKCP--VMWPTSSKAPTFFRFIF 601
G P ++ TS+ + +L P MWP S P + +FIF
Sbjct: 216 GWPSELRLTSSIIQTLGTPNPSMWPELSTFPDWNKFIF 253
>SPBC17D11.03c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 213
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = -3
Query: 238 TQMHRFS---EPIHLATVVAENYSLCNR 164
T + RF+ EP HL V YS CNR
Sbjct: 5 TMLQRFNGLLEPTHLYIVSVVAYSACNR 32
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 35 MRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQA 178
M++P+R+ + EE T++ +LEE + E L +T+ A
Sbjct: 136 MKEPIRLFGESEEATIQRYYSLLKYKKLEEIENELLTKGVETIDFEHA 183
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 25.0 bits (52), Expect = 8.5
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = -1
Query: 396 IIVDDAGNLLYIN-TTCQ*IS---GDQDTRRASTKLPH-DHFTLTLIHVSMHTDTVKSRR 232
I+V+ GNL Y+N + C+ I G Q + A+T P HF ++ + + ++
Sbjct: 289 IVVNSKGNLTYLNPSDCKVIDTIYGHQRSITAATLSPDATHFYTASYDGTVLSWDIGKQK 348
Query: 231 CIDSVSQSTLRRLLQKITA 175
V +S +++Q I A
Sbjct: 349 AFPLVGESHTNQVMQMIMA 367
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 17 EVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLY 154
+ S+ FM D + +E +L G+K+FY LE +ETL +Y
Sbjct: 1088 KTSKVFMNDSSVL----KEASLSGLKEFYFCEPLE--CVETLVQIY 1127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,046
Number of Sequences: 5004
Number of extensions: 47683
Number of successful extensions: 151
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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