Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00570
(603 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 131 4e-31
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 125 3e-29
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 6e-14
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 73 2e-13
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 71 1e-12
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 68 5e-12
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 68 5e-12
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 60 1e-09
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 59 3e-09
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 58 4e-09
SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 58 4e-09
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 58 7e-09
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 7e-09
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 56 2e-08
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 54 9e-08
SB_21307| Best HMM Match : Helicase_C (HMM E-Value=1.7e-11) 52 5e-07
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 51 6e-07
SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27) 48 6e-06
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 8e-06
SB_58021| Best HMM Match : Helicase_C (HMM E-Value=0.017) 45 4e-05
SB_24297| Best HMM Match : Helicase_C (HMM E-Value=0.017) 45 4e-05
SB_21060| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_56809| Best HMM Match : DEAD (HMM E-Value=2.6e-19) 42 3e-04
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 41 9e-04
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 39 0.003
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05) 39 0.003
SB_23184| Best HMM Match : Helicase_C (HMM E-Value=7.8e-23) 38 0.005
SB_8614| Best HMM Match : Helicase_C (HMM E-Value=1.6e-18) 38 0.005
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 37 0.014
SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20) 35 0.058
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21) 30 1.3
SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_4445| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_35874| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4) 29 2.9
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 28 5.1
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_25218| Best HMM Match : zf-AD (HMM E-Value=0.094) 27 8.8
SB_13951| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 131 bits (317), Expect = 4e-31
Identities = 56/84 (66%), Positives = 72/84 (85%)
Frame = +2
Query: 2 PDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAV 181
P ++LE++ FM DP+RILV+++ELTLEGIKQF++A+E EEWK +TLCDLYDTL+I QAV
Sbjct: 181 PHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAV 240
Query: 182 IFCNNRRKVDWLTESMHLRDFTVS 253
IFCN +RKVDWLTE M +FTV+
Sbjct: 241 IFCNTKRKVDWLTEKMREANFTVA 264
Score = 116 bits (280), Expect = 1e-26
Identities = 59/105 (56%), Positives = 68/105 (64%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXX 435
MHGDM Q+ERE IM+ FR G SRVLI+TD+ ARG+DVQQVS VINYDLP+NRE Y
Sbjct: 266 MHGDMPQKEREAIMKDFRAGQSRVLISTDVWARGLDVQQVSLVINYDLPNNRELYIHRIG 325
Query: 436 XXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDVANLI 570
NFV D R DIE +Y T I EMP +VA+LI
Sbjct: 326 RSGRFGRKGVAINFVKSDDIRILRDIEQYYSTQIDEMPMNVADLI 370
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 125 bits (301), Expect = 3e-29
Identities = 57/84 (67%), Positives = 69/84 (82%)
Frame = +2
Query: 2 PDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAV 181
P DVLEV+ FMRD VRILV++EE+TLEGIKQF++ +E E+WKL+TLCDLY+TL+I QAV
Sbjct: 275 PTDVLEVTNKFMRDVVRILVKREEVTLEGIKQFFVLVEKEDWKLDTLCDLYETLTITQAV 334
Query: 182 IFCNNRRKVDWLTESMHLRDFTVS 253
IF N RRKVDWL M +D TVS
Sbjct: 335 IFANTRRKVDWLAAKMTEKDHTVS 358
Score = 102 bits (244), Expect = 3e-22
Identities = 46/55 (83%), Positives = 52/55 (94%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
MHGDM Q+ER++IM++FR+GSSRVLITTDLLARGIDV QVS VINYDLPSNRENY
Sbjct: 360 MHGDMSQKERDIIMKEFRSGSSRVLITTDLLARGIDVHQVSLVINYDLPSNRENY 414
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 74.5 bits (175), Expect = 6e-14
Identities = 35/103 (33%), Positives = 53/103 (51%)
Frame = +1
Query: 244 YCICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYX 423
YC +HGD QRERE +R FR G + +L+ T + ARG+D+ V VIN+DLP++ E Y
Sbjct: 1126 YCTSIHGDRSQREREEALRTFRCGDTPILVATAVAARGLDIPNVKHVINFDLPTDIEEYV 1185
Query: 424 XXXXXXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPS 552
+F ++ +++ D S E+PS
Sbjct: 1186 HRIGRTGRVGHTGLATSFFNHKNKNVAKELMDILEESKQEIPS 1228
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 72.5 bits (170), Expect = 2e-13
Identities = 30/75 (40%), Positives = 49/75 (65%)
Frame = +2
Query: 5 DDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVI 184
+DV++ + + +P+ I +++EE +L+ IKQ+Y+ + E K E LC++Y LSI Q V+
Sbjct: 290 EDVMKFAETVVPNPIIIRLRREEESLDNIKQYYVVCKNSEDKFEALCNMYGVLSIGQCVV 349
Query: 185 FCNNRRKVDWLTESM 229
FC+ RR WL E M
Sbjct: 350 FCHTRRNAAWLAEKM 364
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/53 (43%), Positives = 39/53 (73%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 414
+ G++ +R ++ +FR G ++LITT++ ARGIDV+QV+ VINYD+P + +
Sbjct: 374 LSGEITIEQRIAVLERFRLGKEKLLITTNVSARGIDVEQVTLVINYDMPMDMQ 426
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 70.5 bits (165), Expect = 1e-12
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXX 429
IC+H M Q ER +QF+ R+L+ T+L RG+D+++V+ V NYD+P + + Y
Sbjct: 363 ICIHRGMKQEERLARYQQFKNFEKRMLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHR 422
Query: 430 XXXXXXXXXXXXXXNFVT-EADRRATEDIEDFYHTSIVEMPSDV 558
FV+ EAD + +++D + ++ E+P ++
Sbjct: 423 VARAGRFGTKGLAITFVSDEADAKTLNEVQDRFEVNVGELPDEI 466
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +2
Query: 44 PVRILVQKE-ELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNNRRKVDWLT 220
P+ + V E +LTL G++Q+Y+ ++ E K L DL D L Q +IF + ++ L+
Sbjct: 294 PMEVYVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDLLEFNQVIIFVKSVQRCTALS 352
Query: 221 ESMHLRDFTVSVCM 262
+ ++F ++C+
Sbjct: 353 HLLLKQNFP-AICI 365
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 68.1 bits (159), Expect = 5e-12
Identities = 36/102 (35%), Positives = 46/102 (45%)
Frame = +1
Query: 247 CICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXX 426
C +H M Q R + FR G R L+ +DL RGID+Q V+ VIN+D P N E Y
Sbjct: 318 CFYIHARMSQSHRNRVFHDFRQGHCRNLVCSDLFTRGIDIQSVNVVINFDFPKNSETYLH 377
Query: 427 XXXXXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPS 552
N +T DR IE+ T I +PS
Sbjct: 378 RIGRSGRFGHLGVAINLITYDDRFDLYKIENELDTEIKPIPS 419
Score = 47.6 bits (108), Expect = 8e-06
Identities = 26/76 (34%), Positives = 43/76 (56%)
Frame = +2
Query: 2 PDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAV 181
P V + +R P I + +ELTL G+ Q+Y +E E+ K+ L L+ L I Q++
Sbjct: 238 PISVRDFKEKHLRKPYEINLM-DELTLHGVTQYYAFVE-EKQKVHCLNTLFQKLQINQSI 295
Query: 182 IFCNNRRKVDWLTESM 229
IFCN+ ++V+ L +
Sbjct: 296 IFCNSVQRVELLARKI 311
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 68.1 bits (159), Expect = 5e-12
Identities = 36/102 (35%), Positives = 46/102 (45%)
Frame = +1
Query: 247 CICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXX 426
C +H M Q R + FR G R L+ +DL RGID+Q V+ VIN+D P N E Y
Sbjct: 318 CFYIHARMSQSHRNRVFHDFRQGHCRNLVCSDLFTRGIDIQSVNVVINFDFPKNSETYLH 377
Query: 427 XXXXXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPS 552
N +T DR IE+ T I +PS
Sbjct: 378 RIGRSGRFGHLGVAINLITYDDRFDLYKIENELDTEIKPIPS 419
Score = 47.6 bits (108), Expect = 8e-06
Identities = 26/76 (34%), Positives = 43/76 (56%)
Frame = +2
Query: 2 PDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAV 181
P V + +R P I + +ELTL G+ Q+Y +E E+ K+ L L+ L I Q++
Sbjct: 238 PISVRDFKEKHLRKPYEINLM-DELTLHGVTQYYAFVE-EKQKVHCLNTLFQKLQINQSI 295
Query: 182 IFCNNRRKVDWLTESM 229
IFCN+ ++V+ L +
Sbjct: 296 IFCNSVQRVELLARKI 311
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/101 (26%), Positives = 55/101 (54%)
Frame = +1
Query: 241 LYCICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
L C+ +H + Q ER + +F++G+ ++L+ TD+ +RG+D+ QV V+N ++P++ ++Y
Sbjct: 272 LTCVGLHSLLSQGERLAALARFKSGTIKILVATDVASRGLDIPQVELVVNSNIPADPKDY 331
Query: 421 XXXXXXXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVE 543
+ VT+ D + IE+ +T + E
Sbjct: 332 IHRVGRTARAGRGGMAISMVTQYDIDRVKKIEEKINTKLTE 372
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 58.8 bits (136), Expect = 3e-09
Identities = 28/93 (30%), Positives = 47/93 (50%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXX 435
+HG +Q +RE + + GS +L+ TD+ RGID++ VS VINYD+ E+Y
Sbjct: 314 LHGGRNQEQREFALSSLKGGSKDILVATDVAGRGIDIKDVSHVINYDMAKTIEDYTHRIG 373
Query: 436 XXXXXXXXXXXXNFVTEADRRATEDIEDFYHTS 534
+F+T++D D++ +S
Sbjct: 374 RTGRAGKTGIAVSFLTQSDSGVFYDLKQLLLSS 406
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/55 (49%), Positives = 37/55 (67%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+HGD Q+ERE + FR G VLI T++ ARG+D+ V VIN+DLPS+ + Y
Sbjct: 992 IHGDRLQQEREEALDDFRKGRCPVLIATNVAARGLDIDDVKHVINFDLPSDIDEY 1046
>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 445
Score = 58.4 bits (135), Expect = 4e-09
Identities = 23/57 (40%), Positives = 37/57 (64%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+ +HGD Q ER +R+F G+ VL+ TD+ ++G+D + VIN+D+P + ENY
Sbjct: 115 VAIHGDKSQEERVHAIREFHQGNKDVLVATDVASKGLDFPDIQHVINFDMPEDIENY 171
>SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 212
Score = 58.4 bits (135), Expect = 4e-09
Identities = 23/57 (40%), Positives = 37/57 (64%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+ +HGD Q ER +R+F G+ VL+ TD+ ++G+D + VIN+D+P + ENY
Sbjct: 115 VAIHGDKSQEERVHAIREFHQGNKDVLVATDVASKGLDFPDIQHVINFDMPEDIENY 171
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 57.6 bits (133), Expect = 7e-09
Identities = 26/55 (47%), Positives = 37/55 (67%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+H D Q +R+ I++ FRTG VLI T+L+ RGID + V+ VINYD P++ Y
Sbjct: 413 IHSDRTQAQRDNIVKSFRTGKIWVLIATELMGRGIDFKGVNLVINYDFPTSAVAY 467
>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 57.6 bits (133), Expect = 7e-09
Identities = 25/82 (30%), Positives = 45/82 (54%)
Frame = +1
Query: 268 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXX 447
++Q +RE + F+TG +R+LI TD+ +RG+D++ ++ VINYD P + E+Y
Sbjct: 76 LEQYDREQALDDFKTGLARILIATDVASRGLDIKDITYVINYDFPRHIEDYVHRVGRTGR 135
Query: 448 XXXXXXXXNFVTEADRRATEDI 513
F++ D R+ +
Sbjct: 136 AGRSGTSLTFISREDWRSAHKL 157
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 56.0 bits (129), Expect = 2e-08
Identities = 21/55 (38%), Positives = 37/55 (67%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+HGD+ Q++REV ++ FR G R L+ TD+ ARG+D+ ++ V+ + P + + Y
Sbjct: 334 LHGDIPQKQREVTLKSFREGKFRCLVATDVAARGLDIPEIDLVVQCEPPKDVDAY 388
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 54.0 bits (124), Expect = 9e-08
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Frame = +1
Query: 253 CMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXX 432
C G Q +R M + ++ R+LI+TDL ARGID + V+ V+N D+P N E Y
Sbjct: 243 CTAGSQTQAKRLEAMEKLKSFHCRILISTDLTARGIDAENVNLVVNMDVPHNGETYLHRI 302
Query: 433 XXXXXXXXXXXXXNFVTEA-DRRATEDIEDFYHTSIVEMPSDVANLI 570
+V + R DIE + +P+ + + +
Sbjct: 303 GRAGRFGTEGMAVTYVANGKEERELRDIERSIDVKMELLPAHIPDTL 349
>SB_21307| Best HMM Match : Helicase_C (HMM E-Value=1.7e-11)
Length = 87
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +1
Query: 298 RQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNF 477
+QF+ R+L+ T+L RG+D+++V+ V NYD+P + + Y F
Sbjct: 6 QQFKNFEKRMLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 65
Query: 478 VT-EADRRATEDIEDFYHTSI 537
V+ EAD + +++D + ++
Sbjct: 66 VSDEADAKTLNEVQDRFEVNV 86
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 51.2 bits (117), Expect = 6e-07
Identities = 27/101 (26%), Positives = 49/101 (48%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXX 435
+H + Q R +++ FR G +L+ TD+ +RG+D +V+ VINYDLP E Y
Sbjct: 362 LHSEKPQDYRFKLVKAFRDGKVDILVATDVASRGLDFPEVTHVINYDLPDTIECYIHRCG 421
Query: 436 XXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDV 558
+F+T D + E++++ +P ++
Sbjct: 422 RTGRIGHHGIATSFLT-LDCKIAEELKEMLEVMEQPIPKEL 461
>SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27)
Length = 331
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/56 (39%), Positives = 36/56 (64%)
Frame = +1
Query: 241 LYCICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSN 408
++ + +HG M + R I FR S +L+ TD++ARG+D+ +V+ VI YD PS+
Sbjct: 116 VHIMALHGKM-KSNRHKIFDSFRKLESGILVCTDVMARGVDIPEVNWVIQYDPPSS 170
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 47.6 bits (108), Expect = 8e-06
Identities = 19/55 (34%), Positives = 35/55 (63%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+H M QR+R + +F+ ++ +L+ TD+ ARG+D+ + VI+Y +P + E Y
Sbjct: 486 LHASMQQRQRLKNLDRFKASNTGLLLATDVAARGLDIANIEHVIHYQVPKDPEVY 540
>SB_58021| Best HMM Match : Helicase_C (HMM E-Value=0.017)
Length = 91
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/70 (35%), Positives = 31/70 (44%)
Frame = +1
Query: 343 LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRATEDIEDF 522
L RGID+Q V+ VIN+D P N E Y N +T DR IE+
Sbjct: 2 LFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGVAINLITYDDRFDLYKIENE 61
Query: 523 YHTSIVEMPS 552
T I +PS
Sbjct: 62 LDTEIKPIPS 71
>SB_24297| Best HMM Match : Helicase_C (HMM E-Value=0.017)
Length = 91
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/70 (35%), Positives = 31/70 (44%)
Frame = +1
Query: 343 LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRATEDIEDF 522
L RGID+Q V+ VIN+D P N E Y N +T DR IE+
Sbjct: 2 LFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRFGHLGVAINLITYDDRFDLYKIENE 61
Query: 523 YHTSIVEMPS 552
T I +PS
Sbjct: 62 LDTEIKPIPS 71
>SB_21060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 845
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 262 GDMDQREREVIMRQFRTGSS-RVLITTDLLARGIDVQQVSCVINYDLPSN 408
G M QRE+E ++ +FR GS ++I T + G+D+ S VI YD+ N
Sbjct: 597 GGMTQREQEEVIAKFRAGSECNIIIATTVAEEGLDIDDCSYVIRYDMMGN 646
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+HG Q++R +F S +L+ TD+ ARG+D+ +V ++ YD + + Y
Sbjct: 848 IHGKQKQQKRTTTFFEFCNAKSGILLCTDVAARGLDIPEVDWIVQYDPADDPKEY 902
>SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +1
Query: 268 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSN 408
M Q+E+E+I+ +F+ G +LI T + G+D++ S VI YD N
Sbjct: 982 MSQQEQELIIEEFKKGVVNILIATSVAEEGLDIKDCSFVIRYDTYGN 1028
>SB_56809| Best HMM Match : DEAD (HMM E-Value=2.6e-19)
Length = 1463
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/43 (41%), Positives = 29/43 (67%)
Frame = +1
Query: 280 EREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSN 408
E+EVI++ FRTG ++LI+T +L G+DV + V+ +D N
Sbjct: 605 EQEVILKSFRTGRIKLLISTSVLEEGLDVPVCNLVVRFDSTMN 647
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/52 (32%), Positives = 31/52 (59%)
Frame = +1
Query: 247 CICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLP 402
C ++ +DQ R + + +F+ + V++ TD+ ARGID+ + VIN+ P
Sbjct: 502 CSYVYSSLDQTARTINVGKFQHKKTMVMVVTDVAARGIDIPMLDNVINFHFP 553
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 40.7 bits (91), Expect = 9e-04
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +1
Query: 262 GDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
G+ R R +F+ ++ +L+ TD+ +RG+D VS VIN+D P++ +Y
Sbjct: 728 GNSGTRIRCERFEKFQNKTADILVCTDIASRGLDTSDVSHVINFDFPNSMVDY 780
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 80 LEGIKQFYIAIELEEWKLETLCDLY--DTLSIAQAVIFCNNRRKVDWLTESMHLRDFTVS 253
L ++ +I + E K E + +L D+ S Q ++FCN+ DWL + HL +S
Sbjct: 624 LPHVRHKFIKLNQHE-KAERIVELLKKDSKSPGQTIVFCNSASSCDWL--ARHLEQHNLS 680
Query: 254 V 256
+
Sbjct: 681 L 681
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 259 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
H M +R + ++F +G R + T G+D V +I+Y++P + E+Y
Sbjct: 819 HAGMSAAQRRKVQKRFMSGELRAVAATVAFGMGLDKSDVRAIIHYNMPKSFESY 872
>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
Length = 584
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQV 375
+HG++ Q +R +++F+ G +L+ TDL ARG+D+ V
Sbjct: 38 LHGNLTQLQRLEALQKFKNGEVDILVATDLAARGLDITGV 77
>SB_23184| Best HMM Match : Helicase_C (HMM E-Value=7.8e-23)
Length = 226
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/47 (31%), Positives = 30/47 (63%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 396
+H +D E++++M +F G S+VLI+T ++ G+DV + ++ D
Sbjct: 98 LHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMD 144
>SB_8614| Best HMM Match : Helicase_C (HMM E-Value=1.6e-18)
Length = 282
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +1
Query: 268 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
M ++E +++ FR +L+ T ++ G+DV + + V+ +D P N +Y
Sbjct: 128 MGSTKQEKVLKMFRKHQINLLVATSVVEEGLDVPKCNFVVRFDFPQNFRSY 178
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +1
Query: 271 DQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
D + +R FRTG ++L+ T+ RG+D +++ V ++P N E Y
Sbjct: 463 DPTKYHKFLRDFRTGQIQLLVGTEETVRGLDFKELDHVYLMEVPKNVEEY 512
>SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20)
Length = 556
Score = 34.7 bits (76), Expect = 0.058
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 271 DQREREVIMRQFRTGSS-RVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
D ++EV+ ++ S RV++ T L G+D+ V +I++ +PS E+Y
Sbjct: 295 DSIQKEVLGEFIKSNSKIRVVVATCALGMGVDIPDVDHIIHFGIPSEVEHY 345
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 33.9 bits (74), Expect = 0.10
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDL 345
+HGDMDQ ER ++ QF+ +L+ TD+
Sbjct: 759 LHGDMDQFERSKVLGQFKKREIPILVATDV 788
>SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2722
Score = 30.7 bits (66), Expect = 0.95
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 259 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDV 366
H + ER++I FR G+ RVL+ T L G+++
Sbjct: 561 HAGLTFDERDIIEGAFRQGTIRVLVATSTLCSGVNL 596
>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
Length = 1728
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = +1
Query: 268 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 396
+ Q+E+ ++ +FR G L++T + G+D+ V ++ +D
Sbjct: 564 LSQKEQLEVVHRFRMGGYNTLVSTCVGEEGLDIGDVDLIVCFD 606
>SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 259 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
H + +R+ + +++ G V+ T G+D V V ++ LP + E Y
Sbjct: 279 HAGLKSDKRDKVQQEWMEGKVAVICATISFGMGVDKGDVRFVAHWSLPQSMEGY 332
>SB_4445| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/82 (23%), Positives = 31/82 (37%)
Frame = +1
Query: 247 CICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXX 426
C + G + E+EVI Q + I +RG+D+ V+ VI D ++
Sbjct: 75 CAFLTGTEIKEEKEVIEAQLPLSYNSRTIKDGFASRGLDIPNVTHVIQLDFATDAAQMLH 134
Query: 427 XXXXXXXXXXXXXXXNFVTEAD 492
NF+T+ D
Sbjct: 135 RVGRTARAGSHGKVVNFITKDD 156
>SB_35874| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4)
Length = 494
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +1
Query: 271 DQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNREN 417
D ++EV+ + + RV + T +L + + V +I+Y +PS E+
Sbjct: 8 DYIQKEVLEEFTKPNNIRVAVATRVLGFRVSILHVESLIHYGIPSEEEH 56
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +1
Query: 247 CICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVIN 390
C+ +HG + Q +++ + +QF G +V+ +T+ I + V V++
Sbjct: 939 CLPLHGKLLQEDQQKVFQQF-PGKRKVVFSTNCAETSITIPGVKFVVD 985
>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4482
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 71 ELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQ 175
E L + Q AI+L EW+ C LY ++ + Q
Sbjct: 3881 ERPLSEVLQLTGAIQLTEWEFSEACHLYTSVRVGQ 3915
>SB_25218| Best HMM Match : zf-AD (HMM E-Value=0.094)
Length = 436
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 100 KLFNTFQGKLFLLYKYAYRISHKASRYFQYIIR 2
+L T GK FLL Y YR S K + +F + R
Sbjct: 387 RLMETQSGKHFLLIVYIYRESRKVTVHFGHDYR 419
>SB_13951| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +2
Query: 161 LSIAQAVIFCNNRRK 205
LSIAQ +IFC+N RK
Sbjct: 228 LSIAQDIIFCSNNRK 242
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +2
Query: 161 LSIAQAVIFCNNRRK 205
LSIAQ +IFC+N RK
Sbjct: 466 LSIAQDIIFCSNNRK 480
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,499,345
Number of Sequences: 59808
Number of extensions: 370838
Number of successful extensions: 917
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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