Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00570
         (603 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    63   8e-12
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         38   2e-04
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    29   0.088
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    25   2.5  
AJ302661-1|CAC35526.1|  128|Anopheles gambiae gSG8 protein protein.    24   4.4  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   7.6  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 62.9 bits (146), Expect = 8e-12
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
 Frame = +1

Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXX 435
           +HGD  QRERE+ +  F++G   VLI T + ARG+D++ V+ V+NYDLP + ++Y     
Sbjct: 453 IHGDRLQREREMALYDFKSGRMDVLIATSVAARGLDIKNVNHVVNYDLPKSIDDYVHRIG 512

Query: 436 XXXXXXXXXXXXNFV-TEADRRATEDI 513
                       +F   EADR    D+
Sbjct: 513 RTGRVGNKGRATSFYDPEADRAMASDL 539


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 38.3 bits (85), Expect = 2e-04
 Identities = 15/51 (29%), Positives = 33/51 (64%)
 Frame = +1

Query: 268 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
           ++ R++E ++++FR     +LI T +L  GI++ + + VI ++ P+N  +Y
Sbjct: 595 IEHRKQEEVLKRFRMHECNLLIGTSVLEEGIELPKCNLVIRWNSPANYRSY 645


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 29.5 bits (63), Expect = 0.088
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 59  VQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNNRRK 205
           V+KE+L  E IKQ+   +  +E K  TL +  D  +  QA +   N R+
Sbjct: 351 VEKEKLVKEEIKQYDELVSAKESKESTLKNSLDKFAKVQANMRATNERR 399


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 548 PVMWPTSSKAPT 583
           PV WP SS APT
Sbjct: 469 PVSWPVSSDAPT 480


>AJ302661-1|CAC35526.1|  128|Anopheles gambiae gSG8 protein protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 488 LTGEPLKILRTSTTLVSLKC 547
           L G+P   LRTSTT  +L C
Sbjct: 22  LRGDPFVALRTSTTNRTLLC 41


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.0 bits (47), Expect = 7.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 316 SSRVLITTDLLARGIDVQQVSCVINYDL 399
           +SR  +   LLA  I V    CV+N DL
Sbjct: 204 TSRAELQKILLAFNIQVDNPICVLNQDL 231


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 639,886
Number of Sequences: 2352
Number of extensions: 12076
Number of successful extensions: 23
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58450473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)