Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00570
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       59   3e-11
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   0.76 
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   5.3  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 59.3 bits (137), Expect = 3e-11
 Identities = 25/55 (45%), Positives = 37/55 (67%)
 Frame = +1

Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
           +HGD  QR+RE  +  F++G   +L+ T + ARG+D++ VS VINYDLP   + Y
Sbjct: 481 IHGDRLQRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEY 535


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +3

Query: 42  ILYAYLYRRKSLPWKVLNNFTLQLN*KNGSWKLCVTCMIHCLLH 173
           I Y ++  R  LPW   NN+    N  N   +  ++C +    H
Sbjct: 85  IFYFFMSMRSELPWGSCNNYWNTKNCVNPYDRDSLSCWLQMTKH 128


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -1

Query: 237 RRCIDSVSQSTLRRLLQKITACAID 163
           R+C+D+          QK + C ID
Sbjct: 99  RQCVDNAKNEDKCLTAQKFSRCVID 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,144
Number of Sequences: 438
Number of extensions: 3470
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)