Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00570
(603 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 129 1e-30
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 128 2e-30
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 128 3e-30
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 126 1e-29
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 120 6e-28
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 73 1e-13
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 73 1e-13
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 73 1e-13
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 72 3e-13
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 69 3e-12
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 69 3e-12
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 69 3e-12
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 69 3e-12
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 68 6e-12
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 67 7e-12
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 67 7e-12
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 67 7e-12
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 67 1e-11
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 67 1e-11
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 66 1e-11
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 66 2e-11
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 66 2e-11
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 66 2e-11
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 66 2e-11
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 64 5e-11
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 64 7e-11
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 64 9e-11
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 63 1e-10
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 60 1e-09
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 60 1e-09
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 58 4e-09
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 57 8e-09
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 56 2e-08
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 56 2e-08
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 55 4e-08
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 55 4e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 55 4e-08
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 54 6e-08
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 54 6e-08
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 54 1e-07
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 53 2e-07
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 52 2e-07
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 51 7e-07
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 50 9e-07
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 50 1e-06
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 48 4e-06
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 48 4e-06
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 48 4e-06
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 48 4e-06
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 48 5e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 48 5e-06
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 47 8e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 47 1e-05
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 46 2e-05
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 45 3e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 44 6e-05
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 42 2e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 42 4e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 41 5e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 40 0.001
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 40 0.001
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 40 0.002
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 40 0.002
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 39 0.003
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 38 0.007
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 36 0.021
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 36 0.021
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli... 35 0.036
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 35 0.048
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 34 0.063
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 34 0.083
At3g43920.1 68416.m04701 ribonuclease III family protein similar... 32 0.25
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 32 0.34
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 32 0.34
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 31 0.59
At4g37020.1 68417.m05244 expressed protein 29 0.83
At4g32700.1 68417.m04655 DNA-directed DNA polymerase family prot... 30 1.4
At3g24340.1 68416.m03056 SNF2 domain-containing protein / helica... 30 1.4
At1g05480.1 68414.m00557 SNF2 domain-containing protein / helica... 28 5.5
At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3... 28 5.5
At1g03950.1 68414.m00380 SNF7 family protein contains Pfam domai... 28 5.5
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 129 bits (312), Expect = 1e-30
Identities = 58/84 (69%), Positives = 70/84 (83%)
Frame = +2
Query: 2 PDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAV 181
P + LE++R FM PVRILV+++ELTLEGIKQFY+ +E EEWKLETLCDLY+TL+I Q+V
Sbjct: 223 PPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSV 282
Query: 182 IFCNNRRKVDWLTESMHLRDFTVS 253
IF N RRKVDWLT+ M RD TVS
Sbjct: 283 IFVNTRRKVDWLTDKMRSRDHTVS 306
Score = 121 bits (291), Expect = 4e-28
Identities = 59/104 (56%), Positives = 72/104 (69%)
Frame = +1
Query: 259 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXX 438
HGDMDQ R++IMR+FR+GSSRVLITTDLLARGIDVQQVS VIN+DLP+ ENY
Sbjct: 309 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGR 368
Query: 439 XXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDVANLI 570
NFVT D R DI+ FY+ + E+PS+VA+L+
Sbjct: 369 SGRFGRKGVAINFVTRDDERMLFDIQKFYNVVVEELPSNVADLL 412
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 128 bits (310), Expect = 2e-30
Identities = 57/84 (67%), Positives = 70/84 (83%)
Frame = +2
Query: 2 PDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAV 181
P + LE++R FM PVRILV+++ELTLEGIKQFY+ ++ EEWKLETLCDLY+TL+I Q+V
Sbjct: 225 PPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSV 284
Query: 182 IFCNNRRKVDWLTESMHLRDFTVS 253
IF N RRKVDWLT+ M RD TVS
Sbjct: 285 IFVNTRRKVDWLTDKMRSRDHTVS 308
Score = 120 bits (290), Expect = 6e-28
Identities = 58/104 (55%), Positives = 72/104 (69%)
Frame = +1
Query: 259 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXX 438
HGDMDQ R++IMR+FR+GSSRVLITTDLLARGIDVQQVS VIN+DLP+ ENY
Sbjct: 311 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGR 370
Query: 439 XXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDVANLI 570
NF+T D R DI+ FY+ + E+PS+VA+L+
Sbjct: 371 SGRFGRKGVAINFMTSEDERMMADIQRFYNVVVEELPSNVADLL 414
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 128 bits (309), Expect = 3e-30
Identities = 57/84 (67%), Positives = 70/84 (83%)
Frame = +2
Query: 2 PDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAV 181
P + LE++R FM PVRILV+++ELTLEGIKQFY+ +E E+WKLETLCDLY+TL+I Q+V
Sbjct: 223 PPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSV 282
Query: 182 IFCNNRRKVDWLTESMHLRDFTVS 253
IF N RRKVDWLT+ M RD TVS
Sbjct: 283 IFVNTRRKVDWLTDKMRSRDHTVS 306
Score = 120 bits (289), Expect = 7e-28
Identities = 59/104 (56%), Positives = 73/104 (70%)
Frame = +1
Query: 259 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXX 438
HGDMDQ R++IMR+FR+GSSRVLITTDLLARGIDVQQVS VIN+DLP+ ENY
Sbjct: 309 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGR 368
Query: 439 XXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDVANLI 570
NFVT D+R DI+ FY+ + E+PS+VA+L+
Sbjct: 369 SGRFGRKGVAINFVTLDDQRMLFDIQKFYNVVVEELPSNVADLL 412
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 126 bits (303), Expect = 1e-29
Identities = 54/84 (64%), Positives = 72/84 (85%)
Frame = +2
Query: 2 PDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAV 181
P ++LE++ FM +PV+ILV+++ELTLEGIKQF++A+E EEWK +TLCDLYDTL+I QAV
Sbjct: 219 PHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAV 278
Query: 182 IFCNNRRKVDWLTESMHLRDFTVS 253
IFCN +RKVD+L+E M +FTVS
Sbjct: 279 IFCNTKRKVDYLSEKMRSHNFTVS 302
Score = 117 bits (281), Expect = 7e-27
Identities = 59/105 (56%), Positives = 69/105 (65%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXX 435
MHGDM Q+ER+ IM +FR+G SRVLITTD+ ARGIDVQQVS VINYDLP+NRE Y
Sbjct: 304 MHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIG 363
Query: 436 XXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDVANLI 570
NFV D + DIE +Y T I EMP +VA+LI
Sbjct: 364 RSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 408
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 120 bits (290), Expect = 6e-28
Identities = 52/84 (61%), Positives = 67/84 (79%)
Frame = +2
Query: 2 PDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAV 181
P ++LE++ FM DPVRILV+ +ELTLEGIKQ+Y+ ++ EEWK +TLCDLY L+I QA+
Sbjct: 206 PQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLTINQAI 265
Query: 182 IFCNNRRKVDWLTESMHLRDFTVS 253
IFCN R+KVDWLTE M +F VS
Sbjct: 266 IFCNTRQKVDWLTEKMRSSNFIVS 289
Score = 95.9 bits (228), Expect = 2e-20
Identities = 50/101 (49%), Positives = 62/101 (61%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXX 435
MHGD Q+ER+ IM QFR+ SRVLI +D+ ARGIDVQ VS VINYD+P+N E Y
Sbjct: 291 MHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIG 350
Query: 436 XXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDV 558
NFV +D + +DIE Y T I EMP+D+
Sbjct: 351 RAGRFGREGVAINFVKSSDMKDLKDIERHYGTKIREMPADL 391
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 72.9 bits (171), Expect = 1e-13
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXX 429
IC+H M Q ER + F+ G R+L+ TDL+ RGID+++V+ VINYD+P + + Y
Sbjct: 316 ICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHR 375
Query: 430 XXXXXXXXXXXXXXNFVTEA-DRRATEDIEDFYHTSIVEMPSDV 558
FV A D +++ + I E+P +
Sbjct: 376 VGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQI 419
Score = 42.3 bits (95), Expect = 2e-04
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 DVLEVSRCFMRDPVRILVQKE-ELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVI 184
++ V + FM+DP+ I V E +LTL G+ Q YI + E K L DL D L Q VI
Sbjct: 235 EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-EMEKNRKLNDLLDALDFNQVVI 293
Query: 185 FCNNRRKVDWLTESMHLRDFTVSVCMET 268
F + + L + + +F S+C+ +
Sbjct: 294 FVKSVSRAAELNKLLVECNFP-SICIHS 320
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 72.9 bits (171), Expect = 1e-13
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXX 429
IC+H M Q ER + F+ G R+L+ TDL+ RGID+++V+ VINYD+P + + Y
Sbjct: 233 ICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHR 292
Query: 430 XXXXXXXXXXXXXXNFVTEA-DRRATEDIEDFYHTSIVEMPSDV 558
FV A D +++ + I E+P +
Sbjct: 293 VGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQI 336
Score = 43.2 bits (97), Expect = 1e-04
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 DVLEVSRCFMRDPVRILVQKE-ELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVI 184
++ V + FM+DP+ I V E +LTL G+ Q YI + E K L DL D L Q VI
Sbjct: 152 EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-EMEKTRKLNDLLDALDFNQVVI 210
Query: 185 FCNNRRKVDWLTESMHLRDFTVSVCMET 268
F + + L + + +F S+C+ +
Sbjct: 211 FVKSVSRAAELNKLLVECNFP-SICIHS 237
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 72.9 bits (171), Expect = 1e-13
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXX 429
IC+H M Q ER + F+ G R+L+ TDL+ RGID+++V+ VINYD+P + + Y
Sbjct: 316 ICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHR 375
Query: 430 XXXXXXXXXXXXXXNFVTEA-DRRATEDIEDFYHTSIVEMPSDV 558
FV A D +++ + I E+P +
Sbjct: 376 VGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQI 419
Score = 43.2 bits (97), Expect = 1e-04
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +2
Query: 8 DVLEVSRCFMRDPVRILVQKE-ELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVI 184
++ V + FM+DP+ I V E +LTL G+ Q YI + E K L DL D L Q VI
Sbjct: 235 EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-EMEKTRKLNDLLDALDFNQVVI 293
Query: 185 FCNNRRKVDWLTESMHLRDFTVSVCMET 268
F + + L + + +F S+C+ +
Sbjct: 294 FVKSVSRAAELNKLLVECNFP-SICIHS 320
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 71.7 bits (168), Expect = 3e-13
Identities = 35/106 (33%), Positives = 55/106 (51%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXX 429
+ +HGD Q ER+ ++ QFR+G S VLI TD+ ARG+D++ + VINYD P+ E+Y
Sbjct: 707 VVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHR 766
Query: 430 XXXXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDVANL 567
F TE D + D+ + ++P V ++
Sbjct: 767 IGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDI 812
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 68.5 bits (160), Expect = 3e-12
Identities = 37/108 (34%), Positives = 48/108 (44%)
Frame = +1
Query: 247 CICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXX 426
C +H M Q R + FR G+ R L+ TDL RGID+Q V+ VIN+D P N E Y
Sbjct: 395 CFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLH 454
Query: 427 XXXXXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDVANLI 570
N +T DR IE T I ++P + I
Sbjct: 455 RVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 502
Score = 48.4 bits (110), Expect = 4e-06
Identities = 28/76 (36%), Positives = 44/76 (57%)
Frame = +2
Query: 2 PDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAV 181
P V + F+ +P I + +ELTL+GI QFY +E E K+ L L+ L I Q++
Sbjct: 315 PVTVKDFKDRFLTNPYVINLM-DELTLKGITQFYAFVE-ERQKIHCLNTLFSKLQINQSI 372
Query: 182 IFCNNRRKVDWLTESM 229
IFCN+ +V+ L + +
Sbjct: 373 IFCNSVNRVELLAKKI 388
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 68.5 bits (160), Expect = 3e-12
Identities = 37/108 (34%), Positives = 48/108 (44%)
Frame = +1
Query: 247 CICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXX 426
C +H M Q R + FR G+ R L+ TDL RGID+Q V+ VIN+D P N E Y
Sbjct: 395 CFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLH 454
Query: 427 XXXXXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDVANLI 570
N +T DR IE T I ++P + I
Sbjct: 455 RVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 502
Score = 48.4 bits (110), Expect = 4e-06
Identities = 28/76 (36%), Positives = 44/76 (57%)
Frame = +2
Query: 2 PDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAV 181
P V + F+ +P I + +ELTL+GI QFY +E E K+ L L+ L I Q++
Sbjct: 315 PVTVKDFKDRFLTNPYVINLM-DELTLKGITQFYAFVE-ERQKIHCLNTLFSKLQINQSI 372
Query: 182 IFCNNRRKVDWLTESM 229
IFCN+ +V+ L + +
Sbjct: 373 IFCNSVNRVELLAKKI 388
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 68.5 bits (160), Expect = 3e-12
Identities = 37/108 (34%), Positives = 49/108 (45%)
Frame = +1
Query: 247 CICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXX 426
C +H M Q R + +FR G+ R L+ TDL RGID+Q V+ VIN+D P E+Y
Sbjct: 388 CFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLH 447
Query: 427 XXXXXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDVANLI 570
N VT DR E T I +PS++ I
Sbjct: 448 RVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEIKPIPSNIDQAI 495
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = +2
Query: 68 EELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNNRRKVDWLTESM 229
++LTL G+ Q+Y +E E K+ L L+ L I Q++IFCN+ +V+ L + +
Sbjct: 329 DQLTLMGVTQYYAFVE-ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKI 381
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 68.5 bits (160), Expect = 3e-12
Identities = 37/108 (34%), Positives = 49/108 (45%)
Frame = +1
Query: 247 CICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXX 426
C +H M Q R + +FR G+ R L+ TDL RGID+Q V+ VIN+D P E+Y
Sbjct: 388 CFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLH 447
Query: 427 XXXXXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDVANLI 570
N VT DR E T I +PS++ I
Sbjct: 448 RVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEIKPIPSNIDQAI 495
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/54 (37%), Positives = 34/54 (62%)
Frame = +2
Query: 68 EELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNNRRKVDWLTESM 229
++LTL G+ Q+Y +E E K+ L L+ L I Q++IFCN+ +V+ L + +
Sbjct: 329 DQLTLMGVTQYYAFVE-ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKI 381
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 67.7 bits (158), Expect = 6e-12
Identities = 26/55 (47%), Positives = 43/55 (78%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+HGD Q+EREV +R F+TG + +L+ TD+ ARG+D+ V+ V+N+DLP++ ++Y
Sbjct: 435 IHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 489
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 67.3 bits (157), Expect = 7e-12
Identities = 26/55 (47%), Positives = 43/55 (78%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+HGD Q+EREV +R F+TG + +L+ TD+ ARG+D+ V+ V+N+DLP++ ++Y
Sbjct: 438 IHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 492
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 67.3 bits (157), Expect = 7e-12
Identities = 26/55 (47%), Positives = 43/55 (78%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+HGD Q+EREV +R F+TG + +L+ TD+ ARG+D+ V+ V+N+DLP++ ++Y
Sbjct: 438 IHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 492
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 67.3 bits (157), Expect = 7e-12
Identities = 31/106 (29%), Positives = 57/106 (53%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXX 429
+ +HGD Q ER+ ++ +FR+G S ++ TD+ ARG+DV+ V VINYD P + E+Y
Sbjct: 372 LSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHR 431
Query: 430 XXXXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDVANL 567
F T A+ R +++ + + ++ ++A++
Sbjct: 432 IGRTGRAGAKGTAYTFFTVANARFAKELTNILQEAGQKVSPELASM 477
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 66.9 bits (156), Expect = 1e-11
Identities = 24/57 (42%), Positives = 41/57 (71%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+ +HGD Q ER+ ++ +F++G S ++ TD+ ARG+DV+ + CV+NYD P+ E+Y
Sbjct: 438 LAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDY 494
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +2
Query: 2 PDDVLEVSRCFMRDPVRILVQKEELTL-EGIKQFYIAIELEEWKLETLCDLYDTLSIAQA 178
P +V ++R F+RDP + ++ +L + I Q + E L L + ++
Sbjct: 354 PREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKI 413
Query: 179 VIFCNNRRKVDWLTESMHL 235
+IF +R D +T + +
Sbjct: 414 LIFVETKRGCDQVTRQLRM 432
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 66.9 bits (156), Expect = 1e-11
Identities = 31/104 (29%), Positives = 52/104 (50%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXX 435
+HGD Q ER+ ++ QFR+G + VL+ TD+ ARG+DV+ + V+NYD P+ E+Y
Sbjct: 503 IHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIG 562
Query: 436 XXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDVANL 567
F + D + D+ + ++P V +
Sbjct: 563 RTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREM 606
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 66.5 bits (155), Expect = 1e-11
Identities = 36/104 (34%), Positives = 52/104 (50%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXX 435
+H D+ ERE + QFR G VLI TD++ARG+D + ++CVINYD P + Y
Sbjct: 410 IHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIG 469
Query: 436 XXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDVANL 567
F TE D +I + +S E+PS + +L
Sbjct: 470 RSGRAGRSGEAITFYTEQDVPFLRNIANTMMSSGCEVPSWIMSL 513
Score = 36.7 bits (81), Expect = 0.012
Identities = 21/85 (24%), Positives = 38/85 (44%)
Frame = +2
Query: 2 PDDVLEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAV 181
PD V E++R M D VR+++ ++ E +KQ + EE KL L + +
Sbjct: 325 PDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAESLNPPVL 384
Query: 182 IFCNNRRKVDWLTESMHLRDFTVSV 256
IF ++ + L + + + V
Sbjct: 385 IFVQSKERAKELYDELKCENIRAGV 409
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 66.1 bits (154), Expect = 2e-11
Identities = 26/55 (47%), Positives = 40/55 (72%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+HGD Q ER+ ++ QFR+G + VL+ TD+ ARG+DV+ + V+NYD P+ E+Y
Sbjct: 432 IHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDY 486
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 66.1 bits (154), Expect = 2e-11
Identities = 26/55 (47%), Positives = 40/55 (72%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+HGD Q ER+ ++ QFR+G + VL+ TD+ ARG+DV+ + V+NYD P+ E+Y
Sbjct: 432 IHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDY 486
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 66.1 bits (154), Expect = 2e-11
Identities = 26/55 (47%), Positives = 40/55 (72%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+HGD Q ER+ ++ QFR+G + VL+ TD+ ARG+DV+ + V+NYD P+ E+Y
Sbjct: 432 IHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDY 486
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 65.7 bits (153), Expect = 2e-11
Identities = 36/102 (35%), Positives = 45/102 (44%)
Frame = +1
Query: 247 CICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXX 426
C +H M Q R + FR G+ R L+ TDL RGID+Q V+ VIN+D P E+Y
Sbjct: 418 CFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLH 477
Query: 427 XXXXXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPS 552
N VT DR E T I +PS
Sbjct: 478 RVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEIKPIPS 519
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/66 (33%), Positives = 40/66 (60%)
Frame = +2
Query: 32 FMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNNRRKVD 211
+++ P I+ ++LTL G+ Q+Y +E E K+ L L+ L I Q++IFCN+ +V+
Sbjct: 348 YLKKPY-IINLMDQLTLMGVTQYYAFVE-ERQKVHCLNTLFSKLQINQSIIFCNSVNRVE 405
Query: 212 WLTESM 229
L + +
Sbjct: 406 LLAKKI 411
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 64.5 bits (150), Expect = 5e-11
Identities = 32/102 (31%), Positives = 50/102 (49%)
Frame = +1
Query: 247 CICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXX 426
C +HGD+ Q +RE + FR G +L+ TD+ ARG+DV V +I+Y+LP+N E +
Sbjct: 375 CEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVH 434
Query: 427 XXXXXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPS 552
++ RA + IE + E+PS
Sbjct: 435 RTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVGSRFTELPS 476
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 64.1 bits (149), Expect = 7e-11
Identities = 24/55 (43%), Positives = 43/55 (78%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+HGD Q+EREV ++ F++G + +L+ TD+ ARG+D+ V+ V+N+DLP++ ++Y
Sbjct: 448 IHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 502
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 63.7 bits (148), Expect = 9e-11
Identities = 31/110 (28%), Positives = 53/110 (48%)
Frame = +1
Query: 247 CICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXX 426
C+ +HG DQ +RE + F+ +LI T + ARG+DV+++ V+N+D P++ E+Y
Sbjct: 803 CLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVH 862
Query: 427 XXXXXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDVANLI*G 576
F++E D + D+ S +P D+ L G
Sbjct: 863 RVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDLKALADG 912
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 63.3 bits (147), Expect = 1e-10
Identities = 26/58 (44%), Positives = 39/58 (67%)
Frame = +1
Query: 247 CICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
C +HGD+ Q +RE + FR G+ +L+ TD+ ARG+DV V VI+Y+LP+N E +
Sbjct: 387 CEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETF 444
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/102 (30%), Positives = 49/102 (48%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXX 435
+HG Q +RE+ + FR VL+ TD++ RGID+ V+ VINYD+P + E Y
Sbjct: 606 LHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIG 665
Query: 436 XXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDVA 561
+F+T D D++ S +P ++A
Sbjct: 666 RTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQSNSAVPPELA 707
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 59.7 bits (138), Expect = 1e-09
Identities = 23/57 (40%), Positives = 36/57 (63%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+ +HG DQ +RE + F+ G VL+ TD+ ++G+D + VINYD+P+ ENY
Sbjct: 425 VAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY 481
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 58.0 bits (134), Expect = 4e-09
Identities = 23/55 (41%), Positives = 37/55 (67%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+HGD+ Q +RE + FR G VL+ TD+ +RG+D+ V VI+Y+LP++ E +
Sbjct: 380 LHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETF 434
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 57.2 bits (132), Expect = 8e-09
Identities = 22/57 (38%), Positives = 35/57 (61%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+ +HG DQ +R+ + F+ G VL+ TD+ ++G+D + VINYD+P ENY
Sbjct: 376 VAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENY 432
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/53 (41%), Positives = 41/53 (77%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 414
+HG++ + +R+ I+++F+ ++VLI TD++ARG D Q+V+ V+NY+LP+ E
Sbjct: 370 VHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYE 422
Score = 37.5 bits (83), Expect = 0.007
Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +2
Query: 35 MRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCD-LYDTLSIAQAVIFCNNR 199
++DP ++ V++E+L L+ +KQ+ + E+ K+E + D + + I Q +IF +
Sbjct: 295 VKDPNQLFVKREDLALDSVKQYKVVCPKEQNKIEVIKDQIMELGDIGQTIIFVKTK 350
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 55.6 bits (128), Expect = 2e-08
Identities = 21/55 (38%), Positives = 38/55 (69%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
MHGD+ + R ++++F+ G +VL+T +L ARG+DV + V+N +LP++ +Y
Sbjct: 437 MHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHY 491
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 54.8 bits (126), Expect = 4e-08
Identities = 22/57 (38%), Positives = 37/57 (64%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
I + G M Q +R + +F+ G +L+ TD+ +RG+D+ V VINYD+P+N ++Y
Sbjct: 288 IPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDY 344
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 54.8 bits (126), Expect = 4e-08
Identities = 21/53 (39%), Positives = 36/53 (67%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 414
+HGD DQ R +++F++G VLI TD+ ARG+D++ + V+NYD+ + +
Sbjct: 503 LHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMD 555
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 54.8 bits (126), Expect = 4e-08
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+HG M+Q +R F+T VL++TD+ ARG+D +V C+I YD P Y
Sbjct: 379 LHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEY 433
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 54.4 bits (125), Expect = 6e-08
Identities = 31/106 (29%), Positives = 49/106 (46%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXX 429
+ +HG+ +ER +M F G VL++T +L RG+D+ V VI +D+PS + Y
Sbjct: 386 LSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHV 445
Query: 430 XXXXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDVANL 567
FV E DR D+ +S +P ++ NL
Sbjct: 446 IGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAIPKELINL 491
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 54.4 bits (125), Expect = 6e-08
Identities = 31/106 (29%), Positives = 49/106 (46%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXX 429
+ +HG+ +ER +M F G VL++T +L RG+D+ V VI +D+PS + Y
Sbjct: 249 LSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHV 308
Query: 430 XXXXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDVANL 567
FV E DR D+ +S +P ++ NL
Sbjct: 309 IGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAIPKELINL 354
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/102 (29%), Positives = 49/102 (48%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXX 429
+C +GDMDQ R++ + +FR + +LI TD+ ARGID+ + VIN+D P + +
Sbjct: 300 VC-YGDMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHR 358
Query: 430 XXXXXXXXXXXXXXNFVTEADRRATEDIEDFYHTSIVEMPSD 555
+FVT D D+ F + P++
Sbjct: 359 VGRAARAGRTGCAYSFVTPEDMPYMLDLHLFLSKPVRPAPTE 400
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/90 (28%), Positives = 43/90 (47%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXX 429
I MH Q R + +F++G +L+ TD+ +RG+D+ V VINYD+P + +Y
Sbjct: 330 IAMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHR 389
Query: 430 XXXXXXXXXXXXXXNFVTEADRRATEDIED 519
+ +TE D + IE+
Sbjct: 390 VGRTARAGRGGLAVSIITETDVKLIHKIEE 419
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 52.4 bits (120), Expect = 2e-07
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+ +HG+ Q ER + F+ GS +L+ TD+ ARG+D+ V VINY P E+Y
Sbjct: 394 VSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDY 450
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 50.8 bits (116), Expect = 7e-07
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +1
Query: 250 IC-MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+C + +M QR R + +FR + +LI TDL+ARGID++ V +I+Y LP + E Y
Sbjct: 529 VCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVY 586
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 50.4 bits (115), Expect = 9e-07
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +1
Query: 259 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSN 408
HG MDQ+ R+ + F SS VL+ TD+ ARG+D+ + V+ YD P +
Sbjct: 300 HGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQD 349
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/94 (26%), Positives = 45/94 (47%)
Frame = +1
Query: 277 REREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXX 456
R +E + F++ +LI T + ARG+DV+++ V+N+D P++ E+Y
Sbjct: 651 RSQEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGR 710
Query: 457 XXXXXNFVTEADRRATEDIEDFYHTSIVEMPSDV 558
F++E D + D+ S +P DV
Sbjct: 711 KGCAVTFISEDDAKYAPDLVKALELSEQPVPDDV 744
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 48.4 bits (110), Expect = 4e-06
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = +1
Query: 241 LYCICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
L + + GDM+ R + + R G +L++TD+ ARGID+ + + + N+DLP +Y
Sbjct: 366 LEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDY 425
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 48.4 bits (110), Expect = 4e-06
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = +1
Query: 241 LYCICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
L + + GDM+ R + + R G +L++TD+ ARGID+ + + + N+DLP +Y
Sbjct: 209 LEILLLEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDY 268
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 48.4 bits (110), Expect = 4e-06
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSN 408
I +HGDM Q R+ + F SS L+ TD+ ARG+D+ + V+ YD P +
Sbjct: 306 IPIHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQD 358
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 48.4 bits (110), Expect = 4e-06
Identities = 26/80 (32%), Positives = 38/80 (47%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXX 435
+HG++ Q +R + FR LI TD+ ARG+D+ V VINY P ++Y
Sbjct: 442 LHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVG 501
Query: 436 XXXXXXXXXXXXNFVTEADR 495
FVT++DR
Sbjct: 502 RTARAGREGYAVTFVTDSDR 521
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 48.0 bits (109), Expect = 5e-06
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+HG++ Q +REV + FR G L+ T++ ARG+D+ V +I + P E Y
Sbjct: 376 LHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAY 430
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 48.0 bits (109), Expect = 5e-06
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+H Q R + +FR S +L+T+D+ ARG+D VS V+ LPS+RE Y
Sbjct: 368 IHSRKPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQY 422
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 47.2 bits (107), Expect = 8e-06
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = +1
Query: 262 GDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLP 402
G ++Q R ++ FR G +VL+ +D L RG+DV+ V+ VINYD+P
Sbjct: 360 GGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMP 406
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+H Q R + +FR + +L+T+D+ ARG+D VS V+ LPS+RE Y
Sbjct: 670 IHSRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQY 724
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+HG MDQ R F +L+ TD+ ARG+D+ V +I YD P Y
Sbjct: 364 IHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEY 418
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 45.2 bits (102), Expect = 3e-05
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +1
Query: 247 CICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
C+ + G +DQ +R QF + +L+ T++ ARG+D V ++ YD P N +Y
Sbjct: 427 CLEIRGGIDQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDY 484
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 44.4 bits (100), Expect = 6e-05
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+H Q R + +FR +L+T+D+ ARG+D V+ V+ LP +RE Y
Sbjct: 342 IHSRKPQSYRTRVSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQY 396
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+H Q R + +F+ + +L+T+D+ ARG++ V+ VI +PS+RE Y
Sbjct: 664 IHARKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQY 718
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 41.5 bits (93), Expect = 4e-04
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
+H Q R + +F+ + +L+T+D+ ARG++ V+ VI +PS+RE Y
Sbjct: 617 IHARKPQLHRTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQY 671
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 41.1 bits (92), Expect = 5e-04
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +1
Query: 259 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDV 366
HG MDQ+ R+ + F SS VL+ TD+ ARG+D+
Sbjct: 273 HGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDI 308
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQ-VSCVINYDLPSNRENYXXXX 432
+HG M Q +R + QF S VL TD+LARG+D + V V+ D P + +Y
Sbjct: 348 LHGKMSQEKRMGVYSQFIERQS-VLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRV 406
Query: 433 XXXXXXXXXXXXXNFVTEADRRATEDIED 519
F+T ++ + E +++
Sbjct: 407 GRTARFYTQGKSLLFLTPSEEKMIEKLQE 435
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 39.9 bits (89), Expect = 0.001
Identities = 29/99 (29%), Positives = 41/99 (41%)
Frame = +1
Query: 223 IYASA*LYCICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLP 402
I A + C H + ER I+ FR + V + TD ARG+DV VS VI D
Sbjct: 443 ILEKASIQCYRYHKNHKLDERANILADFRE-TGGVFVCTDAAARGVDVPNVSHVIQADFA 501
Query: 403 SNRENYXXXXXXXXXXXXXXXXXNFVTEADRRATEDIED 519
S+ ++ + TEA+R E I +
Sbjct: 502 SSAVDFLHRIGRTARAGQYGTVTSLYTEANRDLVEAIRE 540
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGI 360
+ +HGD Q ER+ ++ +F++G S ++ TD+ ARG+
Sbjct: 438 LAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGL 474
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +2
Query: 2 PDDVLEVSRCFMRDPVRILVQKEELTL-EGIKQFYIAIELEEWKLETLCDLYDTLSIAQA 178
P +V ++R F+RDP + ++ +L + I Q + E L L + ++
Sbjct: 354 PREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKI 413
Query: 179 VIFCNNRRKVDWLTESMHL 235
+IF +R D +T + +
Sbjct: 414 LIFVETKRGCDQVTRQLRM 432
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/47 (29%), Positives = 30/47 (63%)
Frame = +1
Query: 247 CICMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 387
C +HG M ++E + +FR+G +++L++T ++ G+DV S ++
Sbjct: 799 CGLLHGRMKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMV 845
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 268 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLP 402
M +R E I+++F++ +L+ T + G+D+Q VI YDLP
Sbjct: 555 MSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLP 599
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 37.5 bits (83), Expect = 0.007
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +1
Query: 259 HGDMDQREREVIMRQFRT--GSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXX 432
HG++ +R +++F+ G L+ TDL ARG+D+ V V+ +D P N +Y
Sbjct: 401 HGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLHRT 459
Query: 433 XXXXXXXXXXXXXNFVTEADRRATEDIED 519
+ V+ D+ IE+
Sbjct: 460 GRTARMGAKGKVTSLVSRKDQMLAARIEE 488
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 35.9 bits (79), Expect = 0.021
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 259 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDL 399
HG ++ E M +F G ++LI T+++ G+D+Q + +I D+
Sbjct: 513 HGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDV 559
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 35.9 bits (79), Expect = 0.021
Identities = 13/55 (23%), Positives = 34/55 (61%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
++ D+ + R ++++F+ RVL+T +LL G++ + +++ +LP++ +Y
Sbjct: 645 LNRDLRKLRRSSVLKKFKNRDVRVLVTNELLTWGLEDAECDLMVDLELPTDAVHY 699
>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
helicase, putative
Length = 2172
Score = 35.1 bits (77), Expect = 0.036
Identities = 15/43 (34%), Positives = 28/43 (65%)
Frame = +1
Query: 259 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 387
H + + +RE++ QFR G+ +VLI+T LA G+++ + +I
Sbjct: 811 HAGLTRTDREIVENQFRWGNLQVLISTATLAWGVNLPAHTVII 853
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 34.7 bits (76), Expect = 0.048
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 259 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
H + ++R I F + RV++ T G+D V VI++ +P + E Y
Sbjct: 517 HSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEY 570
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 34.3 bits (75), Expect = 0.063
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 274 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 396
Q+ ++ ++ +FR G V++ T + G+D+ +V VI +D
Sbjct: 513 QKIQQAVLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFD 553
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 33.9 bits (74), Expect = 0.083
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +1
Query: 241 LYCICMHGDMDQREREVIMRQFRTG----SSRVLITTDLLARGIDVQQVSCVINYDLPSN 408
L+ + H + Q R M++F + +S L+ TD +RGID V V+ +D P +
Sbjct: 665 LHVLPFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRD 724
Query: 409 RENY 420
Y
Sbjct: 725 PSEY 728
>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
GI:6102610; contains Pfam profiles PF02170: PAZ domain,
PF00636: RNase3 domain
Length = 1531
Score = 32.3 bits (70), Expect = 0.25
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 304 FRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
F+ G +L TD++ G V SC++ +DLP +Y
Sbjct: 417 FQHGKVNLLFITDVVEEGFQVPDCSCMVCFDLPKTMCSY 455
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 31.9 bits (69), Expect = 0.34
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 259 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 420
H + ++R + R+++TG R++ T GID V VI+ L E+Y
Sbjct: 459 HAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESY 512
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 31.9 bits (69), Expect = 0.34
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +1
Query: 265 DMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDL 399
+M + + + +FR G +L+ T + G+D++Q + V+ +DL
Sbjct: 706 EMKSSQMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDL 750
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 31.1 bits (67), Expect = 0.59
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +1
Query: 346 LARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRATEDIEDF 522
+ RGID ++V VIN+D+P + Y + ++ + EDI+ F
Sbjct: 396 VVRGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIKSF 454
>At4g37020.1 68417.m05244 expressed protein
Length = 212
Score = 28.7 bits (61), Expect(2) = 0.83
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Frame = +1
Query: 316 SSRVLITTD----LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVT 483
+S +++ TD LL+ G +INY+LP+ +E Y N V
Sbjct: 126 TSHLVVVTDVCLPLLSSGESSLSARVLINYELPTKKETY--TRRITTCLASGGIVINMVV 183
Query: 484 EADRRATEDIEDFYHTSIVEMPSDVANLI 570
+ + +E+ I EMP +++ ++
Sbjct: 184 GGEVTTLKSLEESSGILIAEMPINISEIL 212
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +2
Query: 98 FYIAIELEEWKLETLCDLYDTLS---IAQAVIFCNNRRKVDWLTESM 229
FY+A++ ++K+ET+ +L L V+ C++R ++D + S+
Sbjct: 23 FYLAVDRPQFKMETVVELLGVLGRRPWLPIVVCCSSRDELDAVCSSL 69
Score = 20.6 bits (41), Expect(2) = 0.83
Identities = 6/18 (33%), Positives = 13/18 (72%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFR 309
++ D+ RER +++ +FR
Sbjct: 80 LYSDLADRERAMVIEKFR 97
>At4g32700.1 68417.m04655 DNA-directed DNA polymerase family protein
similar to DNA helicase HEL308 [Homo sapiens]
GI:19110782; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00476: DNA polymerase family A
Length = 1548
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 259 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDV 366
H + ERE++ +R G RVL T LA G+++
Sbjct: 300 HAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVNL 335
>At3g24340.1 68416.m03056 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P41410 DNA repair
protein rhp54 (RAD54 homolog) {Schizosaccharomyces
pombe}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1132
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +1
Query: 250 ICMHGDMDQREREVIMRQFR---TGSSRVLITTDLLARGIDVQQVSCVINYDLPSN 408
+ MHG ++QR+R+ ++ F +GS +L +T + GI + S V+ D+ N
Sbjct: 976 LLMHGKVEQRDRQHMIDNFNKPDSGSKVLLASTKACSEGISLVGASRVVILDVVWN 1031
>At1g05480.1 68414.m00557 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q9U7E0
Transcriptional regulator ATRX homolog {Caenorhabditis
elegans}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 588
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 280 EREVIMRQFRTGSSRVLITTDLLARG 357
ER+ I R +R G R++ T L+A+G
Sbjct: 485 ERQAISRAYRIGQKRIVYTYHLVAKG 510
>At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3.4)
plant glutamate receptor family, PMID:11379626
Length = 959
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 42 ILYAYLYRRKSLPWKVLNNFTLQLN*KNGSWKLCVTCMIHCLLHK 176
++ A + KS PW L FT+++ G + L V M+ L H+
Sbjct: 593 VVVAPVKEAKSSPWSFLKPFTIEMWAVTGGFFLFVGAMVWILEHR 637
>At1g03950.1 68414.m00380 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 210
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/36 (30%), Positives = 25/36 (69%)
Frame = +1
Query: 256 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 363
M +MD ++ +MR+F+ S+++ +TT++++ ID
Sbjct: 112 MSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSID 147
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,694,024
Number of Sequences: 28952
Number of extensions: 245027
Number of successful extensions: 660
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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