Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00569
         (640 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    25   0.70 
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   5.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   5.0  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   6.6  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   6.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   8.7  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   8.7  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 24.6 bits (51), Expect = 0.70
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 459 RNSFPVITSQPPHPDLTPALQTKHRDRRSDHTPLIRRETLS 581
           R+S P  TS P  P +      KH+  R   TP   ++ L+
Sbjct: 90  RSSSPQ-TSAPTGPPIVRCALRKHKPNRKPRTPFTTQQLLA 129


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = +3

Query: 18  LCQDVSNIDFTNQTSSVAPIIMSIRDNVYQNFSADANKNTDNDE 149
           L  D  N+     T S   I M +    Y N   D  KN +N+E
Sbjct: 368 LGSDEVNLTCWQDTKSANKIAMKLFWAQYTNKMIDRLKNANNNE 411


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 492 PHPDLTPALQTKHRDRRSDHTP 557
           P+P   P  +   RDRRS H P
Sbjct: 80  PYPRFPPYDRMDIRDRRSLHGP 101


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = +3

Query: 93  DNVYQNF------SADANKNTDNDENEQSPEKPKAQTKKYRYYGPIEASIVKLLLNH 245
           ++ YQN+      ++D +KN + ++N     +   + K+   Y     SI +  LNH
Sbjct: 13  NSFYQNYKTNPFLASDCDKNQNTEQNYTHNNEMYHRVKEEPIYESCRFSINQPYLNH 69



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 96  NVYQNFSADANKNTDNDENEQS 161
           N Y+NF    N N   +EN  S
Sbjct: 141 NQYENFQQYDNNNFSAEENSVS 162


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = +3

Query: 93  DNVYQNF------SADANKNTDNDENEQSPEKPKAQTKKYRYYGPIEASIVKLLLNH 245
           ++ YQN+      ++D +KN + ++N     +   + K+   Y     SI +  LNH
Sbjct: 13  NSFYQNYKTNPFLASDCDKNQNTEQNYTHNNEMYHRVKEEPIYESCRFSINQPYLNH 69



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 96  NVYQNFSADANKNTDNDENEQS 161
           N Y+NF    N N   +EN  S
Sbjct: 141 NQYENFQQYDNNNFSAEENSVS 162


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +3

Query: 195 RYYGPIEASIVKLLLNH 245
           +++ P+E S+++L L H
Sbjct: 241 QFFRPVELSLMQLYLGH 257


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 96  NVYQNFSADANKNTDNDENEQS 161
           N Y+NF    N N   +EN  S
Sbjct: 141 NQYENFQQYDNNNFSAEENSVS 162


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,205
Number of Sequences: 336
Number of extensions: 2583
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)