Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00569
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 28 0.99
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 28 0.99
SPAC22H12.01c |mug35|SPAC23G3.13c|sequence orphan|Schizosaccharo... 27 1.7
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 2.3
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 27 3.0
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 27 3.0
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 4.0
SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom... 26 5.3
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 25 7.0
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 25 7.0
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 25 7.0
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc... 25 9.2
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.2
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 25 9.2
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 28.3 bits (60), Expect = 0.99
Identities = 24/106 (22%), Positives = 47/106 (44%)
Frame = +2
Query: 212 RSFYCEITVESQISALVDDRTGKLAFFCIACEYYTLRFHYDSVLSHVFSETHVHNLSCIM 391
+++ + + +++ V DR G+L FC + TL+ + + + +H + S +
Sbjct: 31 KAYELAVLADCEVAVTVIDRKGRLHVFCSSDYQRTLQQLNTLSIYELKNRSHFSS-SPVE 89
Query: 392 QSDKHIPFLMSETTIESIKEMNAKFLSGHNITATASGLNAGSANKT 529
+S P ETT S +N K L + + S L+ G + T
Sbjct: 90 ESSTVSP----ETTTGSFTPLNNKHLKSQDQPLSDSQLDTGDSPAT 131
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 28.3 bits (60), Expect = 0.99
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 72 PIIMSIRDNV-YQNFSA-DANKNTDNDENEQSPEKPKAQTKKYRYYG 206
P + S+R +NFS D + +T+N +P PKA K Y+G
Sbjct: 151 PYLHSLRSPTSLKNFSRFDTHDSTNNPYFPDNPPSPKADISKDEYFG 197
>SPAC22H12.01c |mug35|SPAC23G3.13c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +3
Query: 48 TNQTSSVAPIIMSIRDNVYQNFSADANKNTDNDENEQSPEKPKAQTKKYRYYG 206
T++ V+P+ S + + + D N D +E+ ++PK ++KKY G
Sbjct: 134 TDKERDVSPVSHSEKP-YWDRYDLDQPSNQDVEESRNLVQEPKHRSKKYDRLG 185
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 293 CIAC-EYYTLRFHYDSVLSHVFSETHVHNLSCIMQS 397
C C E+YT R ++ HV V N+ C++ S
Sbjct: 153 CFDCHEWYTCRHCHNDACDHVLERPAVENMLCMICS 188
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 523 QNIETAEATILHLLDEKHLAMLSDDLYLKMKSDEPER 633
+ +ET + HLL+E L D+L L+ +D+ ER
Sbjct: 964 EELETNRGVVYHLLEENETGKL-DELVLEEYADQLER 999
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 26.6 bits (56), Expect = 3.0
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +2
Query: 308 YYTLRFHYDSVLSHVFSETHVHNLSCIMQSDKHIP---FLMSETTIESIKEMNAKFLSGH 478
+ +R S+ S+ F + L ++ S +P L + T + +FLS
Sbjct: 314 WLNMRGFSSSIHSNGFGLLEWYVLMALLMSSTGLPAGNVLNTYLTAAQFFKSMLQFLSSK 373
Query: 479 NITATASGLNAGSAN 523
N+T+T LNA S+N
Sbjct: 374 NLTSTLFKLNADSSN 388
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 608 FKYKSSESMAKCFSSNKWSMVASAVSMFCLQSRR*VRMRWL*CYDR 471
+K S+ES ++ F +W ++ V CL R +R L C R
Sbjct: 1244 YKVDSNES-SEHFQDTRWKIIYDHVCKLCLSRSRSLRAASLSCLQR 1288
>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 132
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 93 DNVYQNFSADANKNTDNDENEQSPEKPKAQTKK 191
+N Q S ANKN DN N Q+P K + K
Sbjct: 74 NNDLQMSSQSANKNDDN-SNNQNPSNNKEMSDK 105
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 93 DNVYQNFSADANKNTDNDENEQSPEKPKAQTKKYR 197
D Y NKN D+ ++SPE+ ++YR
Sbjct: 393 DRSYHKRRNTGNKNCDDHLRDKSPERRYRYDRRYR 427
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 25.4 bits (53), Expect = 7.0
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Frame = +3
Query: 30 VSNIDFTNQTSSVAPIIMSIRDNVYQNFSADANKNTDN----DENEQSP-EKPKAQTKKY 194
+ NID S+ +I I D YQ DA N D + SP + P + KKY
Sbjct: 599 IKNIDDQLVNGSLGKVIGFIDDETYQMEKKDAEMQGRNAFEYDSLDISPFDLPDVKQKKY 658
Query: 195 RYYGPIEAS 221
+ +AS
Sbjct: 659 KLIAMRKAS 667
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 382 GQVVDVSFAEHVTENAIVVESERVV 308
G VVD F EH+ E I ++ RVV
Sbjct: 466 GNVVDKFFLEHLCETTIESDAMRVV 490
>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 248
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +2
Query: 320 RFHYDSVLSHVFSETHVHNLSCIMQSDKHIPFLMSETTIESIKEMN 457
++ + + + + ++E+H + C+ D SE TI+S K N
Sbjct: 193 KYKFLNRILNAYAESHYESWGCVWNRDIEQLLEDSELTIDSCKRFN 238
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.0 bits (52), Expect = 9.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 51 NQTSSVAPIIMSIRDNVYQNFSADANKNTDNDENEQSPEKPKAQT 185
N S + PI+ S +NV QN + ++ + DND S + QT
Sbjct: 339 NALSQLNPILRS--ENVLQNDNHHSSLSMDNDPTNVSTKNRNNQT 381
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 24 QDVSNIDFTNQTSSVAPIIMSIRDNVYQNFSADANK 131
QD+S +F + + + I M +R N+ +NF + N+
Sbjct: 80 QDLSEDEFVSLYNKLLRIHMGVRKNLEKNFYKNLNE 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,313
Number of Sequences: 5004
Number of extensions: 45519
Number of successful extensions: 182
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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