Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00569
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1041 - 10711362-10711428,10711571-10712262,10712622-107127...    29   3.1  
08_02_0386 - 16575636-16575698,16575799-16575858,16575947-165762...    28   5.4  
02_05_0303 + 27717097-27717149,27717515-27717635,27717746-277180...    28   7.2  
06_03_1471 + 30374988-30375959                                         27   9.5  
02_04_0488 + 23397480-23397687,23397777-23397805,23398462-233985...    27   9.5  
02_04_0485 + 23338980-23339187,23339277-23339305,23339962-233400...    27   9.5  
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171...    27   9.5  

>12_01_1041 -
           10711362-10711428,10711571-10712262,10712622-10712777,
           10712885-10713957,10714422-10714524,10714694-10714876,
           10715007-10715099,10715379-10715564,10716530-10716793
          Length = 938

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 78  IMSIRDNVYQNFSADANKNTDNDENEQSPEKPKAQTKKYRYY 203
           I S+ D  Y     DA   T++D N+     P  QT  YRY+
Sbjct: 333 IESLLDPEYA-LGKDAPDFTNSDRNQDENRNPNLQTTSYRYF 373


>08_02_0386 -
           16575636-16575698,16575799-16575858,16575947-16576239,
           16576361-16576517,16576601-16576948,16577047-16577177,
           16577417-16577882,16578425-16579132
          Length = 741

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 42  DFTNQTSSVAPIIMSIRDNVYQNFSADANKNTDNDENEQSPEKP 173
           DF N    ++P+  +   +  + +S D     DNDE +   +KP
Sbjct: 268 DFVNYNEELSPVTSNNPTSQGKYWSKDETLTNDNDEADDKDDKP 311


>02_05_0303 +
           27717097-27717149,27717515-27717635,27717746-27718057,
           27718172-27718276,27718367-27718821,27718964-27719094,
           27719215-27719268,27719378-27719747,27719848-27719981,
           27720081-27720319
          Length = 657

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
 Frame = +3

Query: 84  SIRDNVYQNFSADANKNTD-----NDENEQSPE-KPKAQTKKYRYYGPIEASIVKLLLNH 245
           ++ D + Q F  DA ++ D     NDENE+ PE   K  T     Y  +  S+   LL +
Sbjct: 417 NLEDGLAQPFLIDAKESLDENGEDNDENEEDPEDSHKPATSLAAAYRLLTPSVKVQLLIY 476

Query: 246 KLVRWLM 266
            ++++ M
Sbjct: 477 FMLKFAM 483


>06_03_1471 + 30374988-30375959
          Length = 323

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 111 FSADANKNTDNDENEQSPEKPKAQTKKYRYYGPIEAS 221
           F  + N N  +D   QS + P A  KKY   GPI+ S
Sbjct: 163 FKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQIS 199


>02_04_0488 +
           23397480-23397687,23397777-23397805,23398462-23398564,
           23398811-23398982,23399380-23399440,23399757-23399889,
           23400438-23400709,23400776-23400843,23401096-23401235,
           23401413-23401499,23401580-23402088,23402173-23402990,
           23403024-23403222,23403662-23403817
          Length = 984

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 198 YYGPIEASIVKLLLNHKLVRWL 263
           Y+GP   +I K+LL H  ++WL
Sbjct: 99  YHGPAFPTISKILLGHVALKWL 120


>02_04_0485 +
           23338980-23339187,23339277-23339305,23339962-23340064,
           23340311-23340482,23340880-23340940,23341257-23341389,
           23341938-23342208,23342595-23342734,23342912-23342998,
           23343078-23343586,23343671-23344488,23344522-23344720,
           23345552-23345696,23345728-23345782,23347652-23347778,
           23347867-23347936,23348448-23348553,23348636-23348747,
           23349243-23349365,23349468-23349627,23349751-23349827,
           23349925-23349977,23350151-23350205,23350500-23351174
          Length = 1495

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 198 YYGPIEASIVKLLLNHKLVRWL 263
           Y+GP   +I K+LL H  ++WL
Sbjct: 99  YHGPAFPTISKILLGHVALKWL 120


>01_06_1249 -
           35714645-35716003,35716700-35716761,35717007-35717181,
           35717276-35717301,35717917-35717983,35719803-35719945,
           35720337-35720349
          Length = 614

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +1

Query: 517 CKQNIETAEATILHLLDEKHLAMLSDDLYLKMKSDEPERA 636
           CKQ +ET+ ATI  LL +   + L D   L +K  E  RA
Sbjct: 326 CKQQLETSRATIDSLLTDG--SKLMDSFSLVVKELEESRA 363


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,606,274
Number of Sequences: 37544
Number of extensions: 288545
Number of successful extensions: 947
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)