Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00569
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47771| Best HMM Match : Annexin (HMM E-Value=0)                     31   0.60 
SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_26476| Best HMM Match : TFIIS_C (HMM E-Value=3.6)                   30   1.4  
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_54552| Best HMM Match : Vicilin_N (HMM E-Value=0.87)                30   1.8  
SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27)               29   2.4  
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              28   5.6  
SB_45888| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.4e-25)           28   5.6  
SB_24824| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.32)              28   5.6  
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_53035| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_47771| Best HMM Match : Annexin (HMM E-Value=0)
          Length = 529

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +3

Query: 120 DANKNTDNDENEQSPEKPKAQTKKYRYYGPIEAS 221
           D NK+ ++D++++   +PK   +K  Y+G + A+
Sbjct: 266 DENKDIEDDKDKEKKSRPKLDVRKIEYHGTVVAA 299


>SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +3

Query: 3   ETYDKLCQDVSNIDFTNQTSSVAPIIMSIRDNVYQNFSADANKNTDNDENEQSPEKPKAQ 182
           ET  K C+D      T   S+   + ++  DN+ +N + D N        E  P+K K  
Sbjct: 73  ETIFKDCKDQPESTLTRTVSTQTELTLADLDNLEKNITCDYNPFKSRKSFEDDPDKLKFY 132

Query: 183 T 185
           T
Sbjct: 133 T 133


>SB_26476| Best HMM Match : TFIIS_C (HMM E-Value=3.6)
          Length = 256

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 462 NSFPVITSQPPHPDLTPALQTKHRDRRSDHTPLIRRETLSHALRRFVLK 608
           +++P   +  P P +TP     H  R S      RR   +H LRR++ K
Sbjct: 52  HTYPQKLTANPEPPITPPFTAPHVRRTSCIFMSSRRVACNHCLRRYICK 100


>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2149

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 93   DNVYQNFSADANKNTDNDENEQSPEKPKAQTKKYRYYGPIEASIVKLLLNH 245
            DNV +    D N +T     E+ P+KP    +K +  GP +A  + +LL H
Sbjct: 976  DNVIEFMELDQNFSTIQQTKEKEPKKP----EKPQVLGPKKAYNISILLGH 1022


>SB_54552| Best HMM Match : Vicilin_N (HMM E-Value=0.87)
          Length = 188

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 48  TNQTSSVAPIIMSIRDNVYQNFSADANKNTDNDENEQSPEKPKAQT 185
           TN    +A  +M +R + YQN + + N N +N+E E+   +   +T
Sbjct: 124 TNTVRQIAQALMQVRAD-YQNNNNNNNNNNNNNETEEVDREAATRT 168


>SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27)
          Length = 592

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +2

Query: 269 RTGKLAFFCIACEYYTLRFHY--DSVL--SHVFSETHVHNLSCIMQSDKHI 409
           RT  L F CI    Y  RF     S+L  + + S  +VH  SC+  +D  +
Sbjct: 449 RTSNLVFTCIESRVYVHRFSCLRSSILVFTCIDSRVYVHRFSCLSVNDSRV 499


>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 362  THVHNLSCIMQSDKHIPFLMSETTIESIKEMNAKFLSGHNITA--TASGLNAGSANKT*R 535
            TH  +L  +  SD+ +    SET++ S+K  N + L     TA    S L+  S      
Sbjct: 2394 THRRSLLKMTSSDEKVKETQSETSLASLKLSNQEILPHKASTAWMKDSVLSNNSLTIQPS 2453

Query: 536  PPKRPYS 556
            PPK P S
Sbjct: 2454 PPKSPPS 2460


>SB_45888| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.4e-25)
          Length = 561

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 412 RDVLVGLHNTGQVVDVSFAEHVTENAIVVES 320
           R+VLVGL    +V D   A HVT + + + S
Sbjct: 530 RNVLVGLGLVAKVADFGLARHVTTDGLYIVS 560


>SB_24824| Best HMM Match : Pkinase_Tyr (HMM E-Value=0.32)
          Length = 193

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 412 RDVLVGLHNTGQVVDVSFAEHVTENAIVVES 320
           R+VLVGL    +V D   A HVT + + + S
Sbjct: 9   RNVLVGLGLVAKVADFGLARHVTTDGLYIVS 39


>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1488

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +3

Query: 528 HRDRRSDHTPLIRRETLSHALRRFVLKNEKRR 623
           H+DR   ++ L+RRE +++ L R +  + +R+
Sbjct: 125 HKDRNDTNSTLLRREAMANELSRALCLSRRRQ 156


>SB_53035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 432

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
 Frame = +2

Query: 221 YCEITVESQISALVDDRTGKLAFFCIACEYYTLRFHYDSVLSHVFSETHVHNLSC----- 385
           Y + TVE+    L+    GK     + C Y       D +L  +  +T V  L C     
Sbjct: 19  YIQATVEAD--GLLGKLMGKTCVDTLECPYIQATVEADGLLGKLMGKTGVDTLECPYIQA 76

Query: 386 IMQSDKHIPFLMSETTIESIK 448
            +++D  +  LM +T +++++
Sbjct: 77  TVEADGLLGNLMGKTGVDTLE 97



 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
 Frame = +2

Query: 221 YCEITVESQISALVDDRTGKLAFFCIACEYYTLRFHYDSVLSHVFSETHVHNLSC----- 385
           Y + TVE+    L+ +  GK     + C Y       D +L  +  +T V  L C     
Sbjct: 73  YIQATVEAD--GLLGNLMGKTGVDTLECPYIQATGEADGLLGKLMGKTGVDTLECPYIQA 130

Query: 386 IMQSDKHIPFLMSETTIESIK 448
            +++D  +  LM +T +++++
Sbjct: 131 TVEADGLLGKLMGKTGVDTLE 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,427,866
Number of Sequences: 59808
Number of extensions: 352887
Number of successful extensions: 1293
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)