Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00569
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   3.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   3.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.8  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 54  QTSSVAPIIMSIRDNV-YQNFSADANKNTDNDENEQSPEKPKAQTKKY 194
           +TS    II S+ +N  Y N++ + N N +N+ N       K   K Y
Sbjct: 74  ETSKEPKIISSLSNNYKYSNYN-NYNNNYNNNYNNNYNNNYKKLYKNY 120



 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/50 (20%), Positives = 26/50 (52%)
 Frame = +3

Query: 3   ETYDKLCQDVSNIDFTNQTSSVAPIIMSIRDNVYQNFSADANKNTDNDEN 152
           ET  +  QD +  + + +   ++ +  + + + Y N++ + N N +N+ N
Sbjct: 61  ETSKERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYN 110


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 54  QTSSVAPIIMSIRDNV-YQNFSADANKNTDNDENEQSPEKPKAQTKKY 194
           +TS    II S+ +N  Y N++ + N N +N+ N       K   K Y
Sbjct: 74  ETSKEPKIISSLSNNYKYSNYN-NYNNNYNNNYNNNYNNNYKKLYKNY 120



 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/50 (20%), Positives = 26/50 (52%)
 Frame = +3

Query: 3   ETYDKLCQDVSNIDFTNQTSSVAPIIMSIRDNVYQNFSADANKNTDNDEN 152
           ET  +  QD +  + + +   ++ +  + + + Y N++ + N N +N+ N
Sbjct: 61  ETSKERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYN 110


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 26  GRLEYRFYKSNQLRSSHHNEY 88
           G L Y F+K +  R  HH  Y
Sbjct: 334 GLLIYDFFKDSSFRIQHHFFY 354


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 489 PPHPDLTPALQTKHRDRRSDHT 554
           PP P LT +   KH    SD++
Sbjct: 213 PPAPRLTNSNSIKHESDNSDYS 234


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 195 RYYGPIEASIVKLLLN 242
           RYYG ++A+  KLL N
Sbjct: 392 RYYGSLQAAARKLLGN 407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,705
Number of Sequences: 438
Number of extensions: 2971
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)