Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00569
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10240.1 68414.m01154 far-red impaired responsive protein, pu...    29   2.6  
At1g77310.1 68414.m09004 wound-responsive protein, putative simi...    29   3.4  
At3g11040.1 68416.m01332 glycosyl hydrolase family 85 protein co...    28   6.0  
At5g16380.1 68418.m01914 expressed protein contains Pfam profile...    27   7.9  
At4g12690.1 68417.m01993 expressed protein                             27   7.9  

>At1g10240.1 68414.m01154 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family
          Length = 680

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/69 (26%), Positives = 36/69 (52%)
 Frame = +2

Query: 305 EYYTLRFHYDSVLSHVFSETHVHNLSCIMQSDKHIPFLMSETTIESIKEMNAKFLSGHNI 484
           E+Y L +H +SV         + N S  + +++HI  L +  ++ S+  + + FL+G  +
Sbjct: 390 EFYRL-YHLESVEEFELGWRDMVN-SFGLHTNRHINNLYASRSLWSLPYLRSHFLAGMTL 447

Query: 485 TATASGLNA 511
           T  +  +NA
Sbjct: 448 TGRSKAINA 456


>At1g77310.1 68414.m09004 wound-responsive protein, putative similar
           to wound-responsive protein 14.05 (GI:16506638)
           [Castanea sativa]
          Length = 699

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +3

Query: 345 VTCSAKLTSTTCPVL-CNPTSTSRF**AKPQLRASKK*TRNSFPVITSQPPHPDLTPALQ 521
           V  S  LT+TT  ++ C P + S F  +K Q    K+ +  S P    +       PAL+
Sbjct: 582 VKASVVLTATTTSLVDCQPAADSSFERSKQQHEKLKRTSSLSNPAAEGKKVRRKTEPALE 641

Query: 522 TKHRDRRSDHTPLIRRET 575
             H          ++R+T
Sbjct: 642 ETHLPAEKPLVLALKRQT 659


>At3g11040.1 68416.m01332 glycosyl hydrolase family 85 protein
           contains similarity to endo-b-N-acetylglucosaminidase
           GI:13774138 from [Mucor hiemalis]
          Length = 701

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 182 DKEIQVLRTDRSFYCEITVESQISALVDDRT-GKLAFFCIACEYYTLRFHYDSVLSHVFS 358
           D  +Q L T      E TV  + S ++D  T  +++ FC   E  T    + ++L H+  
Sbjct: 502 DMSLQCLTTSVQTVSEWTVH-EASLVMDGHTLTEISAFCYRPENSTKSAEFVALLGHISV 560

Query: 359 ETHVHN 376
           + HV N
Sbjct: 561 KDHVQN 566


>At5g16380.1 68418.m01914 expressed protein contains Pfam profile
           PF04398: Protein of unknown function, DUF538
          Length = 195

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 260 VDDRTGKLAFFC-IACEY-YTLRFHYDSVLSHVFSETHVHNLSCIMQSDKHIPF 415
           +D +TG+      + C+  +  +FH+D  +S V S+  + NLS + Q +  + F
Sbjct: 54  IDIKTGRFTVALPVPCDAKFENQFHFDYNISGVLSDGRIGNLSGVTQKELFLWF 107


>At4g12690.1 68417.m01993 expressed protein
          Length = 285

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 629 SGSSLFIFKYKSSESMAKCFSSNKWSMVASAVSMFCL 519
           +G  LFIFK +S ES     + N  +  +S+ S FCL
Sbjct: 241 TGHGLFIFKPESGESETSNETKNCSASSSSSSSEFCL 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,721,433
Number of Sequences: 28952
Number of extensions: 238729
Number of successful extensions: 854
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)