Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00568X
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   114   7e-27
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   113   1e-26
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   2.4  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   4.2  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    25   7.3  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    24   9.7  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    24   9.7  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  114 bits (274), Expect = 7e-27
 Identities = 49/68 (72%), Positives = 55/68 (80%)
 Frame = +1

Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG*RMFAPTKPWRRWHRRVKLR 435
           GHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR  RMFAPTK WR+WH +V   
Sbjct: 59  GHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQN 118

Query: 436 QRTAVFAA 459
           ++    A+
Sbjct: 119 EKRYAIAS 126



 Score = 69.7 bits (163), Expect = 2e-13
 Identities = 32/58 (55%), Positives = 42/58 (72%)
 Frame = +2

Query: 80  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 253
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEK 57


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  113 bits (272), Expect = 1e-26
 Identities = 48/62 (77%), Positives = 53/62 (85%)
 Frame = +1

Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG*RMFAPTKPWRRWHRRVKLR 435
           GHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR  RMFAPTK WR+WH +V   
Sbjct: 59  GHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQN 118

Query: 436 QR 441
           ++
Sbjct: 119 EK 120



 Score = 70.5 bits (165), Expect = 1e-13
 Identities = 33/58 (56%), Positives = 42/58 (72%)
 Frame = +2

Query: 80  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 253
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEK 57


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 141 APCTVSLFSEYTDTKGRATDRLISLL 64
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 79  SIGSPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGP 189
           SI SP+ SVG + +  D +  S + P+ + G     P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 218  KNSRQPYCVSKEVVTKPVLNHGVLDVLSP 304
            ++  +PY ++ +    P+ N G LD++SP
Sbjct: 1054 EDGNEPYAITDDNDYLPMANTGSLDLVSP 1082


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 340 TYEYHHHGHAEFGRQH 293
           T++Y HH H   G  H
Sbjct: 19  THDYDHHNHDHHGHDH 34


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 1   VAWRMVFITAISVYFGGIA-SLK*RNESIGSPTFSV 105
           V W +VF+    ++ GG+A  LK   +S+    F V
Sbjct: 343 VGWGLVFVLICVIWGGGLAFQLKYTRKSVAESDFVV 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,808,194
Number of Sequences: 5004
Number of extensions: 34988
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)