Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00568X
         (459 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               127   5e-30
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.20 
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     32   0.20 
SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.4  
SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   29   2.4  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)                28   4.3  
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)                   27   7.5  
SB_41991| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)            27   9.9  
SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)                27   9.9  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  127 bits (306), Expect = 5e-30
 Identities = 54/62 (87%), Positives = 58/62 (93%)
 Frame = +1

Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG*RMFAPTKPWRRWHRRVKLR 435
           GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG RMFAPTK WR+WH +V ++
Sbjct: 56  GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQ 115

Query: 436 QR 441
           QR
Sbjct: 116 QR 117



 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 30/54 (55%), Positives = 40/54 (74%)
 Frame = +2

Query: 89  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 250
           ARP+++V++E  E+       LP VFKAPIRPDLVN VH +++KN RQPY V+K
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNK 53


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -3

Query: 361 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDHLLAHAVGLPRVLGHRNVNII 194
           Y +HP  T+ YHH  H +   ++ Q+P + H +  H   H + +  +  H+ + +I
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRY--HQQTHKLLIVIINTHKLLIVI 465



 Score = 31.9 bits (69), Expect = 0.26
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 361 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 269
           Y +HP  T+ YH H      R H Q+P + H
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTH 261



 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 352 HPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDH 254
           HP  T+ YH H      R H Q+P + H +  H
Sbjct: 406 HPQVTHRYHQHPQLTH-RYHHQHPQVIHRYHQH 437



 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 361 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 269
           Y +HP  T+ YH        R   Q+P + H
Sbjct: 242 YHQHPQVTHRYHQQHPQVTHRYQYQHPQVTH 272


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = -3

Query: 373 HDTCYRRHP-----DRTYEYHHHGHAEFGRQHVQYPMIQHWF 263
           H+ CYR H         Y Y+ H H  + R H  YP  +H++
Sbjct: 13  HNRCYRHHHYCCYCHHRYCYYRHHHYCWYRHHYHYPCYRHYY 54


>SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = -3

Query: 361 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDH 254
           +  H    +++HHH H     QH  +    H   DH
Sbjct: 6   HHHHDHHHHDHHHHDHQHHDHQHHDHQHHDHHHHDH 41


>SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 717

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 187 PGQ*CSRFYVQELEAALLREQG-GGHQTSAESWGTGRAVARIPRVRGGGT 333
           P Q C   +    E+ +L   G GG+   AE  G     ARI  +RG GT
Sbjct: 596 PAQPCKHLHSYTFESNILGNTGTGGYPGFAERGGRASYQARIQDLRGKGT 645


>SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 340 TYEYHHHGHAEFGRQHVQYPMI-QHWFGDHLLAHAVGLP-RVLGHRNVN 200
           +Y++HHHG  E   Q V    I + W    L +H    P RV+G   ++
Sbjct: 21  SYQWHHHGTGETDDQPVTTTRITRTWVNRRLNSHRTIKPSRVIGRAQIH 69


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 376 NHDTCYRRHPDRTYEYHHHGHAEFGRQH 293
           +H     RH  R + +HHH H E+ R+H
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH 351


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 156  GRGLAAPCTVSLFSEYTDTKGRATDRLI 73
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +2

Query: 65  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPY-- 238
           S +M L   R  +  Y+E    ++   + LP V  AP+  D+V +V  S  K S + Y  
Sbjct: 475 SPQMPLDFPRSFLEDYAEACANLK---QSLPQVHLAPLASDIVREVESSEVKLSLKFYVS 531

Query: 239 --CVSKEVVTK 265
             C S E V K
Sbjct: 532 ENCPSVEAVVK 542


>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 364 CYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 269
           CY +  +  + YHHH H      H Q+    H
Sbjct: 246 CYHKLKNPRHRYHHHHHHHHQHNHHQHHHHHH 277



 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/42 (21%), Positives = 16/42 (38%)
 Frame = -3

Query: 373 HDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDHLL 248
           H   +  H    +++HHH H      H  +    H    H++
Sbjct: 258 HHHHHHHHQHNHHQHHHHHHHHHHNHHHHHQQHHHHHHHHII 299


>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
          Length = 237

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -3

Query: 361 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDH 254
           +R+H +R   +HHH        H  +P   H+   H
Sbjct: 190 HRQHYNRHRRHHHHHRHRHHHHHPNHPYSHHYPNHH 225


>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
          Length = 801

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +1

Query: 244 EQGGGHQTSAESWGTGRAVARIPRVRGGGTHRS-GQGAFG 360
           E G G +     W T R VA   RVR  G  R   QGA G
Sbjct: 258 EGGRGVREGLGYWATARVVAGRKRVRATGPRRGWSQGARG 297


>SB_41991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -3

Query: 454 QRPLSAVGV*RDGANAAR---ASWGRTYVNHDTCYRRHPDRTYEYHH 323
           ++ LS +G  RD A + R   A+WG  Y  H     R  D T ++HH
Sbjct: 143 EKGLSCMGR-RDRACSIRIQPATWGHGYHVHGVRLYREKDDTDDFHH 188


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 385 TYVNHDTCYRRHPDRTYEYHHHGHA 311
           TY + DT  R+HPD     H   HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147


>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
          Length = 677

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 200 HH*PGPDGWAP*TRTGGAWLHPAPSHSSLSTPT 102
           HH      W   T+T   W HP  + ++L  PT
Sbjct: 117 HHTKTQANWYHPTKTQANWYHPTKTQANLYHPT 149


>SB_2368| Best HMM Match : Patched (HMM E-Value=8.6e-08)
          Length = 1420

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 412 NAARASWGRTYVNHDTCYRRHPDRT 338
           NA   SW + +++H   Y +HP+ +
Sbjct: 827 NAKAESWEKAFIDHMKSYVKHPENS 851


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,462,244
Number of Sequences: 59808
Number of extensions: 304587
Number of successful extensions: 797
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)