Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00568X
(459 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 113 6e-26
Z78061-1|CAB01494.1| 658|Caenorhabditis elegans Hypothetical pr... 30 0.70
AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali... 29 2.1
AL132949-40|CAN99706.1| 329|Caenorhabditis elegans Hypothetical... 28 2.8
AL132949-39|CAB61094.1| 295|Caenorhabditis elegans Hypothetical... 28 2.8
AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical... 28 3.8
Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical p... 27 8.7
Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical p... 27 8.7
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 27 8.7
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 27 8.7
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 27 8.7
AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical ... 27 8.7
AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical ... 27 8.7
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 113 bits (272), Expect = 6e-26
Identities = 54/69 (78%), Positives = 57/69 (82%), Gaps = 1/69 (1%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG*RMFAPTKPWRRWHRRVKLR 435
G Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG MFAP K +RRWHR V +
Sbjct: 58 GKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIA 117
Query: 436 Q-RTAVFAA 459
Q R AV +A
Sbjct: 118 QKRYAVSSA 126
Score = 52.4 bits (120), Expect = 2e-07
Identities = 26/53 (49%), Positives = 35/53 (66%)
Frame = +2
Query: 89 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 247
ARPLV+VY EK E Q + LP VF+ PIRPDLV+ + + +N RQ + V+
Sbjct: 3 ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVN 54
>Z78061-1|CAB01494.1| 658|Caenorhabditis elegans Hypothetical
protein C48G7.1 protein.
Length = 658
Score = 30.3 bits (65), Expect = 0.70
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 173 PIRPDLVNDVHVSMSKNSRQPYCVSKEVVTKPVLNHGVLDVLS 301
P + D ++DVH+S S Q K V P L H LS
Sbjct: 205 PSKHDRLDDVHISRSDRRSQSVRSHKSVTASPKLGHSTSSTLS 247
>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
pathway homologprotein 1 protein.
Length = 1451
Score = 28.7 bits (61), Expect = 2.1
Identities = 25/82 (30%), Positives = 36/82 (43%)
Frame = +1
Query: 88 SPTFSVGVLREE*DGAGCSQAPPVRVQGAHPSGPGQ*CSRFYVQELEAALLREQGGGHQT 267
SPT + V++ + GAG QA ++ Q + PSG G A L R GGG+
Sbjct: 85 SPTTNGMVIQAKTPGAGVIQARHMQSQQSFPSG-GPARVLMNRSSTNAGLSRMVGGGYDQ 143
Query: 268 SAESWGTGRAVARIPRVRGGGT 333
+ GR + VR G+
Sbjct: 144 QLPTAPNGRLMIPSTAVRVPGS 165
>AL132949-40|CAN99706.1| 329|Caenorhabditis elegans Hypothetical
protein Y53F4B.39b protein.
Length = 329
Score = 28.3 bits (60), Expect = 2.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 295 HVQYPMIQHWFGDHL 251
H++Y +I HW GDH+
Sbjct: 105 HIEYIVITHWHGDHV 119
>AL132949-39|CAB61094.1| 295|Caenorhabditis elegans Hypothetical
protein Y53F4B.39a protein.
Length = 295
Score = 28.3 bits (60), Expect = 2.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 295 HVQYPMIQHWFGDHL 251
H++Y +I HW GDH+
Sbjct: 71 HIEYIVITHWHGDHV 85
>AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical
protein Y53F4B.36 protein.
Length = 297
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +2
Query: 74 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV-SK 250
MS++V P +S V + + F++ P ++ D H+ + + CV S
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVASF 241
Query: 251 EVVTKPVLNHGVLDVLSPE 307
E +T +++ V +++ P+
Sbjct: 242 EEITDFIVS--VTEIVFPK 258
>Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -1
Query: 180 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 67
+ G LN NGR A F++YT T R TD SL
Sbjct: 7 KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45
>Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -1
Query: 180 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 67
+ G LN NGR A F++YT T R TD SL
Sbjct: 7 KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 188 GPDGWAP*TRTGGAWLHPAPSHSSLSTPTLKVGLPI 81
GPDG T G +++PA + PT K G P+
Sbjct: 3410 GPDGQVLPTDDSGNYIYPAVGPDGQAFPTDKSGKPL 3445
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 188 GPDGWAP*TRTGGAWLHPAPSHSSLSTPTLKVGLPI 81
GPDG T G +++PA + PT K G P+
Sbjct: 3455 GPDGQVLPTDDSGNYIYPAVGPDGQAFPTDKSGKPL 3490
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 188 GPDGWAP*TRTGGAWLHPAPSHSSLSTPTLKVGLPI 81
GPDG T G +++PA + PT K G P+
Sbjct: 3455 GPDGQVLPTDDSGNYIYPAVGPDGQAFPTDKSGKPL 3490
>AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical
protein M01B12.4b protein.
Length = 644
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 189 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 76
R R+ A+ RG+A+P T +L D K GRA D L
Sbjct: 568 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 607
>AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical
protein M01B12.4a protein.
Length = 634
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 189 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 76
R R+ A+ RG+A+P T +L D K GRA D L
Sbjct: 558 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 597
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,342,325
Number of Sequences: 27780
Number of extensions: 221409
Number of successful extensions: 683
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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