Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00568X
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.1  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   4.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   4.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   8.5  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 331 YHHHGHAEFGRQHVQY 284
           +HHH H     QH+ Y
Sbjct: 351 HHHHHHQTQSLQHLHY 366


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 406 RRWHRRVKLRQRTA 447
           RRW RR   R RTA
Sbjct: 1   RRWDRREARRARTA 14


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 343 GQGAFGNMCRG 375
           G G FG++CRG
Sbjct: 640 GGGEFGDVCRG 650


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 313 AEFGRQHVQYPMIQHWFGDHLLAHAVGLPRVL 218
           +E+G  +VQY  +Q  F    +A  +    VL
Sbjct: 287 SEYGANNVQYQGVQDIFNTESIAKIMSKNGVL 318


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,314
Number of Sequences: 438
Number of extensions: 2588
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)