Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00568X
(459 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 120 4e-28
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 120 4e-28
At1g76010.1 68414.m08825 expressed protein 30 0.86
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 1.1
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 29 2.0
At3g04640.1 68416.m00497 glycine-rich protein predicted proteins... 29 2.0
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 2.6
At3g12430.1 68416.m01548 expressed protein ; expression supporte... 28 3.5
At2g42200.2 68415.m05223 squamosa promoter-binding protein-like ... 27 4.6
At2g42200.1 68415.m05222 squamosa promoter-binding protein-like ... 27 4.6
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to... 27 4.6
At4g29230.1 68417.m04181 no apical meristem (NAM) family protein... 27 6.1
At5g04140.2 68418.m00402 glutamate synthase (GLU1) / ferredoxin-... 27 8.1
At5g04140.1 68418.m00401 glutamate synthase (GLU1) / ferredoxin-... 27 8.1
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 120 bits (290), Expect = 4e-28
Identities = 54/69 (78%), Positives = 60/69 (86%), Gaps = 1/69 (1%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG*RMFAPTKPWRRWHRRVKLR 435
GHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRG RMFAPTK WRRWHRRV +
Sbjct: 65 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVN 124
Query: 436 -QRTAVFAA 459
+R A+ +A
Sbjct: 125 MKRHAIVSA 133
Score = 58.4 bits (135), Expect = 2e-09
Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 253
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKK 63
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 120 bits (290), Expect = 4e-28
Identities = 54/69 (78%), Positives = 60/69 (86%), Gaps = 1/69 (1%)
Frame = +1
Query: 256 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG*RMFAPTKPWRRWHRRVKLR 435
GHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRG RMFAPTK WRRWHRRV +
Sbjct: 64 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVN 123
Query: 436 -QRTAVFAA 459
+R A+ +A
Sbjct: 124 MKRHAIVSA 132
Score = 60.5 bits (140), Expect = 5e-10
Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Frame = +2
Query: 74 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 247
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 248 KE 253
K+
Sbjct: 61 KK 62
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 29.9 bits (64), Expect = 0.86
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = +1
Query: 247 QGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 375
QG G + G GR R R RGGG R G G F N G
Sbjct: 303 QGRGGYDGPQGRGRGRGRGRGGRGRGGG--RGGDGGFNNRSDG 343
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +2
Query: 98 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 244
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 241 REQGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 360
R GGG+ S+ +G GR+ R G + RSG G+FG
Sbjct: 512 RSGGGGYGGSSGGYGGGRSGGSSNRY-SGDSDRSGFGSFG 550
>At3g04640.1 68416.m00497 glycine-rich protein predicted proteins,
Arabidopsis thaliana
Length = 159
Score = 28.7 bits (61), Expect = 2.0
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +1
Query: 247 QGGGHQTSAESWGT---GRAVARIPRVRGGGTHRSGQGAFG 360
+GGG +S G+ G + IP + GGGTHRSG + G
Sbjct: 99 RGGGGSSSRGGGGSSSRGGGLRPIP-IYGGGTHRSGHHSSG 138
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 149 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 244
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 4.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 149 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 244
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At3g12430.1 68416.m01548 expressed protein ; expression supported
by MPSS
Length = 238
Score = 27.9 bits (59), Expect = 3.5
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 152 GAWLHPAPSHSSLSTPTLKVGLPID--SFRYFSEAIPPKY 39
G W+H SH+ S+ L VG+ + Y+S + P +Y
Sbjct: 38 GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77
>At2g42200.2 68415.m05223 squamosa promoter-binding protein-like 9
(SPL9) identical to squamosa promoter binding
protein-like 9 [Arabidopsis thaliana] GI:5931673;
contains Pfam profile PF03110: SBP domain
Length = 369
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +1
Query: 244 EQGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 348
E GGG S+ S G RVRGGG+ +SGQ
Sbjct: 41 EDGGGGSGSSSSGGRSNR-----RVRGGGSGQSGQ 70
>At2g42200.1 68415.m05222 squamosa promoter-binding protein-like 9
(SPL9) identical to squamosa promoter binding
protein-like 9 [Arabidopsis thaliana] GI:5931673;
contains Pfam profile PF03110: SBP domain
Length = 375
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +1
Query: 244 EQGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ 348
E GGG S+ S G RVRGGG+ +SGQ
Sbjct: 41 EDGGGGSGSSSSGGRSNR-----RVRGGGSGQSGQ 70
>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
glycine-rich protein; atGRP (GI:259447) [Arabidopsis
thaliana]
Length = 145
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 247 QGGGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR 372
QGGG + G GR R +GGG + G G+ G+ CR
Sbjct: 79 QGGGGRYQG---GGGRYQGGGGRYQGGGGRQGGGGSGGSYCR 117
>At4g29230.1 68417.m04181 no apical meristem (NAM) family protein
similar to NAM family proteins GP|12751304|,
GP|6223650|, GP|9758909 - Arabidopsis
thaliana,PIR2:T04621
Length = 498
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = -3
Query: 337 YEYHHHGHAEFGRQHVQYPMIQHWFGDHLLAHAVGLPRVLGHRNVNIID 191
+++HHH H + ++H + + Q H ++ + L H ++NI+D
Sbjct: 359 HDHHHHHHQQQQQRHHAFNISQ---PTHPISTIISPSTSLHHASINILD 404
>At5g04140.2 68418.m00402 glutamate synthase (GLU1) /
ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
identical to ferredoxin-dependent glutamate synthase
precursor [Arabidopsis thaliana] GI:3869251
Length = 1648
Score = 26.6 bits (56), Expect = 8.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +2
Query: 173 PIRPDLVNDVHVSMSKNSR----QPYCVSKEVVTKPVLNHGVLDVL 298
P+R LV + V++ K P S+ +++ PVLN G L+ L
Sbjct: 644 PLREGLVMSLEVNIGKRGNILELGPENASQVILSNPVLNEGALEEL 689
>At5g04140.1 68418.m00401 glutamate synthase (GLU1) /
ferredoxin-dependent glutamate synthase (Fd-GOGAT 1)
identical to ferredoxin-dependent glutamate synthase
precursor [Arabidopsis thaliana] GI:3869251
Length = 1622
Score = 26.6 bits (56), Expect = 8.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +2
Query: 173 PIRPDLVNDVHVSMSKNSR----QPYCVSKEVVTKPVLNHGVLDVL 298
P+R LV + V++ K P S+ +++ PVLN G L+ L
Sbjct: 618 PLREGLVMSLEVNIGKRGNILELGPENASQVILSNPVLNEGALEEL 663
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,995,222
Number of Sequences: 28952
Number of extensions: 214471
Number of successful extensions: 691
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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