Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00567
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    31   0.23 
SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces pom...    30   0.41 
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    28   1.6  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    27   2.9  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   5.0  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.0  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    26   6.6  
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    26   6.6  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    25   8.8  

>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
 Frame = +1

Query: 382 RWLHEAYGLGRFGYAQP-----ERFHYSISGRQER 471
           R++HEA+G+  FG + P     E+FH++ SG  +R
Sbjct: 629 RYVHEAFGMHTFGDSGPAPKLYEKFHFTTSGVAQR 663


>SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 744 EYHTEELNQSDTDSNAGEHHTNVLHVNNQFSKTSLRVEVGRVLGAGR 604
           +Y  E+L  SD DS+   HH N + + N+ ++    +   R + AGR
Sbjct: 76  QYCLEKLASSDNDSSVHNHHDNSV-LRNEDTQLQPHIVCNRTVRAGR 121


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 544 DRPSRPDCLYRSLQVCLYDINSLLDVLVYRILSNGSVQVAH 422
           +RP+ P+ L   + +C  D NS+    VY  LS+GS+   H
Sbjct: 541 ERPTYPEYLKIPILIC-GDFNSVQGSGVYDFLSSGSISQNH 580


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 392 MKHTDLEDSVMRNLNASITQYPVDKN 469
           +K   +EDS + N+ AS+  + VDKN
Sbjct: 416 VKVETVEDSFLSNIGASLLSFTVDKN 441


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 445  NGSVQVAHNRIFQVRMLHVTSDAHSQFSHEYDQEE 341
            +GS+ + H++ FQ    H T  +  +   EY   E
Sbjct: 1111 SGSISLKHSKSFQSASTHSTKSSSVEIVREYSSRE 1145


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 659 SLVRHPFEWKLVEFSVQAA 603
           SLVRHP   K++ F +Q+A
Sbjct: 150 SLVRHPHRLKMLPFGIQSA 168


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 493 TNRLASCGINSPADWADHGLPIPS 564
           +N++A   I SP  W+  G+PIP+
Sbjct: 495 SNKIAKEFILSPQQWSKLGMPIPN 518


>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -2

Query: 248 ENDRSELVEVLIGEVHVRIRVYFSPDAN 165
           E+   E++E   GE  + +R++F+P+A+
Sbjct: 76  ESPPFEVIETGWGEFDIMVRIFFAPEAH 103


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 629 LVEFSVQAATTPSLISWAEQHVLGMGRP*SAQSAGLFIPQLASL 498
           LVE  + AA       W  Q+ L MG P S  +  +F   L+SL
Sbjct: 253 LVEKILDAAGQKGTGKWTAQNALEMGTPVSLITEAVFARCLSSL 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,313
Number of Sequences: 5004
Number of extensions: 59143
Number of successful extensions: 214
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)