Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00567
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    53   2e-07
Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical pr...    42   5e-04
Z73971-4|CAA98254.1|  205|Caenorhabditis elegans Hypothetical pr...    38   0.010
Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical pr...    33   0.22 
U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    33   0.22 
U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin fam...    32   0.38 
AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical ...    29   2.7  
U64608-5|AAB04596.1|  393|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z66521-7|CAA91401.2|  387|Caenorhabditis elegans Hypothetical pr...    29   4.7  
X98132-1|CAA66831.1|  387|Caenorhabditis elegans N-acetyllactosa...    29   4.7  

>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 20/66 (30%), Positives = 35/66 (53%)
 Frame = +2

Query: 290 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 469
           CCGA++EN+C+ ++F+V L ++   E+A  I GY  H      +   L   + +Y   + 
Sbjct: 71  CCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALHDSFRLGIGNQLQTGMVRYHESRG 130

Query: 470 VQKTID 487
           V+   D
Sbjct: 131 VESAWD 136



 Score = 35.9 bits (79), Expect = 0.031
 Identities = 15/30 (50%), Positives = 23/30 (76%)
 Frame = +3

Query: 81  LEGGMSCVKYLMFCFNLLFAITGLIILIVG 170
           +EGG++ VKYL+F  NL+  + GL ++IVG
Sbjct: 2   VEGGVTIVKYLLFLANLVLWVGGLSLIIVG 31


>Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical
           protein T14G10.6 protein.
          Length = 308

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 19/69 (27%), Positives = 36/69 (52%)
 Frame = +2

Query: 290 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQYPVDKN 469
           C G+++EN   +  +S  L ++ +AE + G+  Y     L++ +   LN  +  Y  D +
Sbjct: 103 CVGSLRENTSFLTFYSTLLGLLLIAEFSAGVFAYACRDQLDNYIRNLLNDVVVGYRDDPD 162

Query: 470 VQKTIDIIQ 496
           +Q  ID +Q
Sbjct: 163 LQLLIDSMQ 171



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +3

Query: 99  CVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 206
           CVKY +F FN++F + G  +L+ G+ A+I    ++N
Sbjct: 37  CVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVN 72


>Z73971-4|CAA98254.1|  205|Caenorhabditis elegans Hypothetical
           protein C50H2.6 protein.
          Length = 205

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +1

Query: 553 PIPSTCCSAQEINDGVVAACTENSTNFHSKGCLTKLV 663
           P+P+T CSA  I++  V +C   ST  H+K  L+K V
Sbjct: 96  PLPATFCSAASIDNNAVKSCKNKSTTLHAKILLSKEV 132


>Z69790-4|CAA93655.1|  282|Caenorhabditis elegans Hypothetical
           protein F33C8.3 protein.
          Length = 282

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +2

Query: 290 CCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI-TQYPVDK 466
           C GA K N C +  F   L++ F  ELA  +  + K   ++  V  ++  +I  +Y  + 
Sbjct: 75  CIGAWKMNQCALAFFCCILILAFFLELAAAVTLFHKQEHIKHYVESSMYDTIRNRYSSET 134

Query: 467 NVQKTIDIIQ 496
             +   D +Q
Sbjct: 135 AFKDAFDTVQ 144


>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 72  TMALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 206
           TM L      +K+ +F FNL+F + GLI L +G+   ++ Y   N
Sbjct: 8   TMPLSCTARALKFSLFIFNLVFLLCGLICLGIGLWLVLDKYAIDN 52


>U41545-5|AAK39137.2|  243|Caenorhabditis elegans Tetraspanin family
           protein 17 protein.
          Length = 243

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
 Frame = +2

Query: 293 CGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI-------TQ 451
           CGAV  +  +++ F +FL+  F+A++A+G    + + D   SV  N+   +       T 
Sbjct: 46  CGAVNRSRFLLLAFVMFLIGTFLADVAMGTLS-LFYKDKVYSVKENVREIVKSKYGVMTS 104

Query: 452 YPVDKNVQKTIDIIQ 496
            P +K V + ID +Q
Sbjct: 105 EPENKMVTEFIDKLQ 119


>AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical
           protein Y39E4B.4 protein.
          Length = 223

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = +2

Query: 296 GAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSV 421
           GAV  +  ++  + +F++I+F+ E+A+GI   +K   +  +V
Sbjct: 91  GAVIRSKYLLAPYFLFMVILFLLEIAIGITVLVKRRSVRRTV 132


>U64608-5|AAB04596.1|  393|Caenorhabditis elegans Hypothetical
           protein T22B7.7 protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 95  HSTFESHCYSIKYYRQIVLLRNKMIHTSANK 3
           H T  SH Y +  YR I+ LR K+  TS NK
Sbjct: 143 HQTSLSHGYGLSPYRDII-LRGKVTWTSENK 172


>Z66521-7|CAA91401.2|  387|Caenorhabditis elegans Hypothetical
           protein W02B12.11 protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +2

Query: 302 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 478
           ++ +HC+I +FS   LIIFVA   +     ++++ L D   R + A+  Q   V+ NVQ+
Sbjct: 1   MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58

Query: 479 T 481
           +
Sbjct: 59  S 59


>X98132-1|CAA66831.1|  387|Caenorhabditis elegans
           N-acetyllactosamine synthase protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +2

Query: 302 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 478
           ++ +HC+I +FS   LIIFVA   +     ++++ L D   R + A+  Q   V+ NVQ+
Sbjct: 1   MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58

Query: 479 T 481
           +
Sbjct: 59  S 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,741,485
Number of Sequences: 27780
Number of extensions: 341915
Number of successful extensions: 1166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)