Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00566
(635 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127; Euka... 143 4e-33
UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes ... 141 1e-32
UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4; Eukary... 120 4e-26
UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5; Magnol... 112 8e-24
UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protei... 105 1e-21
UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n... 102 8e-21
UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative; n... 97 2e-19
UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1; Guilla... 89 6e-17
UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2; Neoptera... 89 8e-17
UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of cy... 88 1e-16
UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia... 86 6e-16
UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7; T... 82 1e-14
UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4; Entamoeba|... 81 2e-14
UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1; O... 79 1e-13
UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1; Enceph... 74 3e-12
UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;... 70 4e-11
UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum... 66 9e-10
UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus ... 64 4e-09
UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum... 62 1e-08
UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiel... 59 1e-07
UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45; root|... 53 5e-06
UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1; Methan... 52 1e-05
UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1; Archae... 50 6e-05
UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1; Arabido... 49 8e-05
UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropy... 49 1e-04
UniRef50_Q53K43 Cluster: Retrotransposon protein, putative, uncl... 48 2e-04
UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5; Thermo... 46 6e-04
UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 43 0.007
UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11; Eurya... 43 0.007
UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum ... 42 0.009
UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3; Sulfol... 42 0.009
UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6; Methan... 42 0.016
UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured... 39 0.12
UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 38 0.15
UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4; Haloba... 38 0.15
UniRef50_Q85FU2 Cluster: 50S ribosomal protein L13; n=1; Cyanidi... 35 1.4
UniRef50_Q4QG46 Cluster: Putative uncharacterized protein; n=2; ... 35 1.4
UniRef50_A5Z5I7 Cluster: Putative uncharacterized protein; n=1; ... 34 3.3
UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1; Nanoar... 34 3.3
UniRef50_Q60TB9 Cluster: Putative uncharacterized protein CBG205... 33 7.6
>UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127;
Eukaryota|Rep: 60S ribosomal protein L13A - Drosophila
melanogaster (Fruit fly)
Length = 205
Score = 143 bits (346), Expect = 4e-33
Identities = 59/84 (70%), Positives = 77/84 (91%)
Frame = +3
Query: 6 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFL 185
MTG +N+ +VIDGRGHLLGRLA+V+AK LL+G KV VVRCE++N+SG+F+RNK+K +++L
Sbjct: 1 MTGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYL 60
Query: 186 RKRCNVNPARGPFHFRAPSKILWR 257
RKRCNVNPARGPFHFRAPS+I ++
Sbjct: 61 RKRCNVNPARGPFHFRAPSRIFYK 84
Score = 116 bits (278), Expect = 6e-25
Identities = 56/120 (46%), Positives = 68/120 (56%)
Frame = +2
Query: 254 ETVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRL 433
+ VRGMIPHKT+RG+ AL RLR +DG P P+D L+ R YC VGRL
Sbjct: 84 KAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRL 143
Query: 434 SHEIGWKYRDVVRKLEDKRKGKAVKELPMKRNLRGSPRMLVRRCRKATTPFTTIIQSYGY 613
SHE+GW Y+DV++ LE KRK K L R L+ KA PF II+SYGY
Sbjct: 144 SHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARENIAKAAEPFNKIIKSYGY 203
>UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes
aegypti|Rep: 60S ribosomal protein L13a - Aedes aegypti
(Yellowfever mosquito)
Length = 236
Score = 141 bits (342), Expect = 1e-32
Identities = 61/84 (72%), Positives = 74/84 (88%)
Frame = +3
Query: 6 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFL 185
M G S K I+IDGRGHLLGRLA+VIAK +L G KVVVVRCE + +SG+FFRNK+K +++L
Sbjct: 1 MPGLSEKPILIDGRGHLLGRLASVIAKQILNGRKVVVVRCEDLQLSGHFFRNKIKFLAYL 60
Query: 186 RKRCNVNPARGPFHFRAPSKILWR 257
RKRCNVNPARGPFHFRAPS++LW+
Sbjct: 61 RKRCNVNPARGPFHFRAPSRMLWK 84
Score = 107 bits (256), Expect = 3e-22
Identities = 45/83 (54%), Positives = 57/83 (68%)
Frame = +2
Query: 254 ETVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRL 433
+ VRGM+PHKT+RG NAL+RL+ Y+G P PFD CL+P R +C VGR+
Sbjct: 84 KAVRGMVPHKTKRGHNALKRLKVYEGIPSPFDRQKRLCVPTAMRQLCLRPDRKFCDVGRV 143
Query: 434 SHEIGWKYRDVVRKLEDKRKGKA 502
+HE+GWKYRDVV LE KRK K+
Sbjct: 144 AHEVGWKYRDVVNNLEAKRKIKS 166
>UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4;
Eukaryota|Rep: 60S ribosomal protein L13a - Cyanophora
paradoxa
Length = 200
Score = 120 bits (288), Expect = 4e-26
Identities = 53/78 (67%), Positives = 64/78 (82%)
Frame = +3
Query: 24 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 203
K +V+D RGHLLGRLAA +AK LL G +VV VR E+INISG+ FRNKLK +FL+KR N
Sbjct: 4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNT 63
Query: 204 NPARGPFHFRAPSKILWR 257
NP RGPFHFR+P++ILWR
Sbjct: 64 NPRRGPFHFRSPARILWR 81
Score = 96.3 bits (229), Expect = 5e-19
Identities = 42/92 (45%), Positives = 58/92 (63%)
Frame = +2
Query: 257 TVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLS 436
T+RGMIPHKT RG AL RL+ ++G PPP+D LKPGR +C +GRL+
Sbjct: 82 TIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLA 141
Query: 437 HEIGWKYRDVVRKLEDKRKGKAVKELPMKRNL 532
E+GW++ D+V +LE+KRK K+ K+ L
Sbjct: 142 TEVGWRHSDLVTRLEEKRKTKSAAFYARKKTL 173
>UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5;
Magnoliophyta|Rep: 60S ribosomal protein L13a - Capsicum
annuum (Bell pepper)
Length = 220
Score = 112 bits (269), Expect = 8e-24
Identities = 49/83 (59%), Positives = 63/83 (75%)
Frame = +3
Query: 9 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLR 188
+G S + IV+D R H+LGRL++++AK LL G +VVVVRCE+I +SG R K+K + FLR
Sbjct: 5 SGISARRIVVDARHHMLGRLSSILAKELLNGQRVVVVRCEEICLSGGLVRQKMKYLRFLR 64
Query: 189 KRCNVNPARGPFHFRAPSKILWR 257
KR N P+ GP HFRAPSKILWR
Sbjct: 65 KRMNTKPSHGPIHFRAPSKILWR 87
Score = 92.3 bits (219), Expect = 9e-18
Identities = 39/82 (47%), Positives = 53/82 (64%)
Frame = +2
Query: 257 TVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLS 436
T+RGMIPHKT+RG AL RL+ Y+G PPP+D L+ G YC +G+LS
Sbjct: 88 TIRGMIPHKTKRGAAALARLKVYEGVPPPYDKIKRMVIPDALKVLRLQAGHKYCLLGKLS 147
Query: 437 HEIGWKYRDVVRKLEDKRKGKA 502
E+GW + D +++LEDKRK +A
Sbjct: 148 SEVGWNHYDTIKELEDKRKERA 169
>UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protein;
n=16; Alveolata|Rep: Ribosomal protein L13 containing
protein - Tetrahymena thermophila SB210
Length = 270
Score = 105 bits (251), Expect = 1e-21
Identities = 48/79 (60%), Positives = 59/79 (74%)
Frame = +3
Query: 21 NKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCN 200
+K +VID +GHLLGRLA+ +AK LL G ++VVVR E INISG+ FRN++K FL K N
Sbjct: 75 DKLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMN 134
Query: 201 VNPARGPFHFRAPSKILWR 257
NP RG HFRAPS+I WR
Sbjct: 135 HNPRRGVQHFRAPSRIFWR 153
Score = 69.3 bits (162), Expect = 7e-11
Identities = 31/81 (38%), Positives = 46/81 (56%)
Frame = +2
Query: 260 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 439
VRGM+PHKT +G AL RL+ ++G P P+D L+ R C +G LS
Sbjct: 155 VRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDALKVQRLRNSRPVCKLGDLSA 214
Query: 440 EIGWKYRDVVRKLEDKRKGKA 502
+GW + ++ KLE+KR+ +A
Sbjct: 215 SVGWGKQTLIEKLEEKRRARA 235
>UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB39CE UniRef100
entry - Canis familiaris
Length = 172
Score = 102 bits (244), Expect = 8e-21
Identities = 48/77 (62%), Positives = 61/77 (79%)
Frame = +3
Query: 24 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 203
+ +V+ GRGHLLG LAA +AK +L G KVVVV E INISGNF+RNKLK ++FL K+ N
Sbjct: 5 QVLVLSGRGHLLGCLAATVAKQVL-GCKVVVVHYEGINISGNFYRNKLKYLAFLCKQMNT 63
Query: 204 NPARGPFHFRAPSKILW 254
NP+RGP+ F+APS+I W
Sbjct: 64 NPSRGPYRFQAPSRIFW 80
Score = 55.6 bits (128), Expect(2) = 8e-08
Identities = 25/72 (34%), Positives = 41/72 (56%)
Frame = +2
Query: 395 LKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKELPMKRNLRGSPRMLVRRCRKA 574
LKP R + ++GRL+H++GWKY+ V LE+ RK KA K+ L + + K
Sbjct: 98 LKPTRKFAYLGRLAHKVGWKYQAVTATLEENRKEKAKIHYWKKKQLMRLWKQAKKNVEKK 157
Query: 575 TTPFTTIIQSYG 610
T +T ++++G
Sbjct: 158 TDKYTEFLKTHG 169
Score = 23.4 bits (48), Expect(2) = 8e-08
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2
Query: 257 TVRGMIPHKT 286
T RGM+PHKT
Sbjct: 82 TARGMLPHKT 91
>UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative;
n=10; Trypanosomatidae|Rep: 60S ribosomal protein L13a,
putative - Leishmania major
Length = 222
Score = 97.5 bits (232), Expect = 2e-19
Identities = 45/76 (59%), Positives = 56/76 (73%)
Frame = +3
Query: 30 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 209
IVID + H+LGR AAV+AK LL G K+ VVRCEQ+NI+G RNK+K + +LRKR NP
Sbjct: 25 IVIDLKDHVLGRAAAVVAKQLLLGKKITVVRCEQLNIAGTEIRNKIKYLQYLRKRKLTNP 84
Query: 210 ARGPFHFRAPSKILWR 257
+GPFH RAPS + R
Sbjct: 85 TKGPFHHRAPSDVFVR 100
Score = 58.8 bits (136), Expect = 1e-07
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Frame = +2
Query: 251 METVRGMIPHKTERGKNALRRLRTYDGCPPPF-DNXXXXXXXXXXXXFCLKPGRNYCHVG 427
+ TVR M+P T+RG AL L Y+G PP C + R Y +G
Sbjct: 99 VRTVRSMLPRYTKRGMKALNSLVAYEGIPPNVVRTGGRVVIPRAQRHVCYRSERPYTVLG 158
Query: 428 RLSHEIGWKYRDVVRKLEDKRKGKAVKELPMKRNLRGSPRMLVRRC-RKATTPFTTIIQS 604
+ +GWKY DVV LE R KA + + LR + + + K +++
Sbjct: 159 NMCKHVGWKYSDVVANLEKARVEKASRHHEKQAKLRDAWKSARKEALAKMPKHNVEVLKK 218
Query: 605 YGY 613
+GY
Sbjct: 219 FGY 221
>UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1;
Guillardia theta|Rep: 60s ribosomal protein L13A -
Guillardia theta (Cryptomonas phi)
Length = 194
Score = 89.4 bits (212), Expect = 6e-17
Identities = 37/78 (47%), Positives = 57/78 (73%)
Frame = +3
Query: 24 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 203
K V+D + HLLGR+A++ AK +L+G+K++++R E +I+G RN K S +K+ N
Sbjct: 2 KIHVLDAKNHLLGRMASICAKKILQGDKIIIIRSELTSITGKLGRNVNKYKSIFKKKTNT 61
Query: 204 NPARGPFHFRAPSKILWR 257
NP RGPFHF++PSKIL++
Sbjct: 62 NPRRGPFHFKSPSKILYQ 79
Score = 51.6 bits (118), Expect = 2e-05
Identities = 25/94 (26%), Positives = 44/94 (46%)
Frame = +2
Query: 254 ETVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRL 433
+T++ MIPHKT RG AL+ L+ ++G P F +K R ++G++
Sbjct: 79 QTIKRMIPHKTMRGSKALKNLKIFEGLPRIFSKIKKEKFFEAFRYKVIKNYRKTVNLGKV 138
Query: 434 SHEIGWKYRDVVRKLEDKRKGKAVKELPMKRNLR 535
+GWK R + + D+ L K+ ++
Sbjct: 139 CEVLGWKNRKFIEQKSDQLAALGKVVLKKKKEIK 172
>UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2;
Neoptera|Rep: Ribomsomal protein L13Ae - Cicindela
campestris (Green tiger beetle)
Length = 78
Score = 89.0 bits (211), Expect = 8e-17
Identities = 36/75 (48%), Positives = 49/75 (65%)
Frame = +2
Query: 392 CLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKELPMKRNLRGSPRMLVRRCRK 571
CLKPGR YCHVGRLSHE+GWKY+ V+ LE KR+ K + R ++ + ++ K
Sbjct: 4 CLKPGRKYCHVGRLSHEVGWKYQKVIESLEHKRQVKVAIKARKHRKMKRLTKKASKKIEK 63
Query: 572 ATTPFTTIIQSYGYN 616
P+T +I+SYGYN
Sbjct: 64 QVAPYTAVIKSYGYN 78
>UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit; n=2;
Ostreococcus|Rep: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit -
Ostreococcus lucimarinus CCE9901
Length = 199
Score = 88.2 bits (209), Expect = 1e-16
Identities = 37/79 (46%), Positives = 55/79 (69%)
Frame = +3
Query: 21 NKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCN 200
+K IVID +GHL GRLA++++K LL+G VVVVR E I +SG R ++ + KR N
Sbjct: 2 DKVIVIDAKGHLFGRLASIVSKQLLQGQHVVVVRTEGICMSGGMVRRRMAHDRYKNKRMN 61
Query: 201 VNPARGPFHFRAPSKILWR 257
NP +GP+H+ +PS++ W+
Sbjct: 62 TNPKKGPYHYTSPSRLFWK 80
Score = 71.3 bits (167), Expect = 2e-11
Identities = 33/91 (36%), Positives = 48/91 (52%)
Frame = +2
Query: 254 ETVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRL 433
+TVRGM+PHKT RG A R + Y+G P P+D L G +C +G
Sbjct: 80 KTVRGMLPHKTVRGAAAFERFKAYEGIPAPYDKVKRAVVPEALKVLRLGEGHRFCVLGDF 139
Query: 434 SHEIGWKYRDVVRKLEDKRKGKAVKELPMKR 526
+IGWK+ +V++LE KR+ A + K+
Sbjct: 140 CEQIGWKHGAIVKELEAKRQTAASEYWAQKK 170
>UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_608_8346_8939 - Giardia lamblia ATCC
50803
Length = 197
Score = 86.2 bits (204), Expect = 6e-16
Identities = 41/76 (53%), Positives = 55/76 (72%)
Frame = +3
Query: 30 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 209
IVID +GH+LGRL+A++AK LL G++V +VRCE+ ISG F K + + KR N N
Sbjct: 4 IVIDCKGHILGRLSAIVAKELLHGHEVALVRCEKAIISGAFRDVKAHYLKKMHKRTNFNH 63
Query: 210 ARGPFHFRAPSKILWR 257
RGPFHFRAP++I+ R
Sbjct: 64 LRGPFHFRAPAEIVRR 79
Score = 78.6 bits (185), Expect = 1e-13
Identities = 35/78 (44%), Positives = 46/78 (58%)
Frame = +2
Query: 257 TVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLS 436
T+RGMIP+KT RG +A+ RLR YDG PP CL+P R C VGR++
Sbjct: 80 TIRGMIPYKTVRGSDAMSRLRVYDGIPPCCARYKRVVCPSAMAYLCLRPERRRCEVGRVA 139
Query: 437 HEIGWKYRDVVRKLEDKR 490
HEIGW++ V + E +R
Sbjct: 140 HEIGWQHAADVERYEKRR 157
>UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7;
Trichomonas vaginalis G3|Rep: Ribosomal protein L13,
putative - Trichomonas vaginalis G3
Length = 200
Score = 81.8 bits (193), Expect = 1e-14
Identities = 41/76 (53%), Positives = 49/76 (64%)
Frame = +3
Query: 30 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 209
IVID +GH+ GRLAA +AK LL+G KVVVVRCE+I ++G FL K N NP
Sbjct: 5 IVIDAKGHIQGRLAAAVAKQLLKGRKVVVVRCEEIELNGQHKFTVHTYERFLNKTTNSNP 64
Query: 210 ARGPFHFRAPSKILWR 257
GPFH RAP +I R
Sbjct: 65 RDGPFHQRAPHEIFAR 80
Score = 65.3 bits (152), Expect = 1e-09
Identities = 33/104 (31%), Positives = 52/104 (50%)
Frame = +2
Query: 260 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 439
VRGMIP+KT RG +A L+ Y+G P + + + R +GRLS
Sbjct: 82 VRGMIPYKTHRGADAFANLQCYEGIPAKYVSYKRLVIPHALRCVSIHTDRPTTKLGRLST 141
Query: 440 EIGWKYRDVVRKLEDKRKGKAVKELPMKRNLRGSPRMLVRRCRK 571
+GWKY +VV +LE++RK ++ K K+ + + + K
Sbjct: 142 TMGWKYGNVVAQLEEQRKAESAKYFEAKKAAQDKRAAAIEKVNK 185
>UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4;
Entamoeba|Rep: Ribosomal protein L13A - Entamoeba dispar
Length = 87
Score = 81.4 bits (192), Expect = 2e-14
Identities = 36/78 (46%), Positives = 53/78 (67%)
Frame = +3
Query: 18 SNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRC 197
+NK VID GH+LGR+A+V+AK LL G K+V+VRCE + + G ++ + RKR
Sbjct: 8 NNKVTVIDCHGHVLGRVASVVAKHLLLGQKIVLVRCEDLQVCGTLKMRLVQWELYQRKRV 67
Query: 198 NVNPARGPFHFRAPSKIL 251
N NP RG FH R+P++++
Sbjct: 68 NTNPTRGAFHHRSPAEMV 85
>UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
ribosomal protein L13a - Oryza sativa subsp. japonica
(Rice)
Length = 172
Score = 78.6 bits (185), Expect = 1e-13
Identities = 34/72 (47%), Positives = 44/72 (61%)
Frame = +2
Query: 257 TVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLS 436
TVRGMIPHKT+RG+ AL RL+ Y+ PP+D L+PG YC +G+LS
Sbjct: 62 TVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLS 121
Query: 437 HEIGWKYRDVVR 472
E+GW Y D +R
Sbjct: 122 KEVGWNYYDTIR 133
Score = 49.6 bits (113), Expect = 6e-05
Identities = 31/83 (37%), Positives = 41/83 (49%)
Frame = +3
Query: 9 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLR 188
+G +V+D R H+L RLA++IAK LL G +VV
Sbjct: 5 SGVCAPRVVVDARHHMLSRLASIIAKELLNGKRVV------------------------- 39
Query: 189 KRCNVNPARGPFHFRAPSKILWR 257
R N P+ GP HFR+P+KILWR
Sbjct: 40 -RMNTKPSHGPIHFRSPAKILWR 61
>UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13A
- Encephalitozoon cuniculi
Length = 198
Score = 74.1 bits (174), Expect = 3e-12
Identities = 35/70 (50%), Positives = 45/70 (64%)
Frame = +3
Query: 30 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 209
++ID G + G+LAA +AK+LLEG +V VV E+ G+ R K +L KRC VNP
Sbjct: 7 VIIDATGQVAGKLAAKVAKLLLEGVRVTVVCAEEAVFVGSLERAMDKFKQYLNKRCLVNP 66
Query: 210 ARGPFHFRAP 239
RGPFHFR P
Sbjct: 67 RRGPFHFREP 76
Score = 48.8 bits (111), Expect = 1e-04
Identities = 27/91 (29%), Positives = 42/91 (46%)
Frame = +2
Query: 260 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 439
+R MI +K RGK A+ RL TY+G P + + P R Y +G+L
Sbjct: 84 IRRMISYKKPRGKAAMSRLATYEGIPRELEGQPRYKVTCAFVKYTGNPNR-YVTLGKLLS 142
Query: 440 EIGWKYRDVVRKLEDKRKGKAVKELPMKRNL 532
GWK+ + + L D+ K + K++L
Sbjct: 143 MFGWKHAEAAKSLTDELKERESLASLQKKDL 173
>UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;
n=1; Pisum sativum|Rep: Putative senescence-associated
protein - Pisum sativum (Garden pea)
Length = 255
Score = 70.1 bits (164), Expect = 4e-11
Identities = 39/91 (42%), Positives = 53/91 (58%)
Frame = +3
Query: 54 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFR 233
+LGRLA+++AK L + +VRCE+I ISG R K+K M FLR+R N P+ GP F
Sbjct: 1 MLGRLASIVAKELSMVRRSFLVRCEEICISGGLGRQKMKYMRFLRRRMNTKPSHGPITFV 60
Query: 234 APSKILWRL*EV*SHTKQSVARMLLGGYVHM 326
+ L HT+ SVAR+ L G +M
Sbjct: 61 LHPRSFGALFVEWFHTRPSVARLHLLGCKYM 91
>UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L13 - Cenarchaeum
symbiosum
Length = 139
Score = 65.7 bits (153), Expect = 9e-10
Identities = 29/76 (38%), Positives = 47/76 (61%)
Frame = +3
Query: 33 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPA 212
++D H+ GRLA+ +AK+LLEGN+V ++ CE++ ISG + FL+ ++P
Sbjct: 1 MVDATDHIAGRLASNVAKMLLEGNRVSIINCEKVMISGKRASIVREYRDFLKIASIIHPE 60
Query: 213 RGPFHFRAPSKILWRL 260
GP+H R P I+ R+
Sbjct: 61 HGPYHPRRPDTIMTRM 76
Score = 34.7 bits (76), Expect = 1.9
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = +2
Query: 260 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 439
+RGM+P K GK A RLR Y G P + +P NY + L
Sbjct: 77 IRGMLPRKKPSGKAAHSRLRAYIGSPGHLKSFEKRKLKGAE---ITRPTANYTTMADLGE 133
Query: 440 EIGW 451
+GW
Sbjct: 134 TVGW 137
>UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L13
- Candidatus Nitrosopumilus maritimus SCM1
Length = 154
Score = 63.7 bits (148), Expect = 4e-09
Identities = 28/81 (34%), Positives = 48/81 (59%)
Frame = +3
Query: 18 SNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRC 197
+++ IV+D H+ GRL++ +AK+L +G++V +V CE+I SG + FL
Sbjct: 10 TDRPIVVDATNHIAGRLSSNVAKLLKQGHRVSIVNCEKIMYSGTRSNLIKEYREFLEINS 69
Query: 198 NVNPARGPFHFRAPSKILWRL 260
+NP GP H+R P I+ ++
Sbjct: 70 IINPKHGPVHYRRPDTIITKM 90
>UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein L13 - Thermofilum
pendens (strain Hrk 5)
Length = 154
Score = 61.7 bits (143), Expect = 1e-08
Identities = 38/87 (43%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Frame = +3
Query: 6 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLK-LMSF 182
M+G +AIVIDG GH+ GRLA+V+AK LL+G++VVVV E+I I+G R K L +
Sbjct: 1 MSG-KEEAIVIDGTGHIAGRLASVVAKRLLKGDRVVVVNAEKIVITGKPKRVVEKYLKRW 59
Query: 183 LRKRCNVNP-ARGPFHFRAPSKILWRL 260
+ + NP RGP + + P ++ R+
Sbjct: 60 VEWKTYYNPELRGPKYPKTPDRLFKRM 86
>UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L13A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 181
Score = 58.8 bits (136), Expect = 1e-07
Identities = 28/79 (35%), Positives = 46/79 (58%)
Frame = +3
Query: 24 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 203
K IVIDGR L+GRLA+ I +L +G + V+RC+ + SG + +++ +
Sbjct: 3 KTIVIDGRNQLIGRLASNIVILLKKGYTLKVIRCKDLVFSGRYEHVYNRILKKKNLKTRT 62
Query: 204 NPARGPFHFRAPSKILWRL 260
NP +GP+ F PS +L ++
Sbjct: 63 NPNKGPYFFSNPSSLLKKI 81
>UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45;
root|Rep: 50S ribosomal protein L13P - Pyrococcus
horikoshii
Length = 142
Score = 53.2 bits (122), Expect = 5e-06
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Frame = +3
Query: 33 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGN--FFRNKLKLMSFLRKRCNVN 206
+I+ G +LGRLA+ +AK+LLEG +VV+V E+ I+GN +K K + LR N
Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTL--TN 60
Query: 207 PARGPFHFRAPSKILWR 257
P RGPF+ + +I+ R
Sbjct: 61 PRRGPFYPKRSDEIVRR 77
Score = 44.8 bits (101), Expect = 0.002
Identities = 23/67 (34%), Positives = 34/67 (50%)
Frame = +2
Query: 257 TVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLS 436
T+RGM+P KT+RG+ A RRL+ Y G P F + +P Y VG ++
Sbjct: 78 TIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHVSRLSRP--KYVTVGEVA 135
Query: 437 HEIGWKY 457
+G K+
Sbjct: 136 KFLGGKF 142
>UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1;
Methanopyrus kandleri|Rep: 50S ribosomal protein L13P -
Methanopyrus kandleri
Length = 159
Score = 52.0 bits (119), Expect = 1e-05
Identities = 29/76 (38%), Positives = 47/76 (61%)
Frame = +3
Query: 33 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPA 212
VID +LGRLA+V+AK +L+G ++ V+ E+ I+G +N +K +L+K +P
Sbjct: 17 VIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITGK--KNTIK-EEWLQKIQRGDPK 73
Query: 213 RGPFHFRAPSKILWRL 260
+GPF+ R P I R+
Sbjct: 74 KGPFYPRRPDLIFRRV 89
Score = 40.3 bits (90), Expect = 0.038
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +2
Query: 260 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 439
VRGM+P KT+RG+ A +RLR Y G P + Y +G LS
Sbjct: 90 VRGMLPWKTKRGREAFKRLRAYIGTPRWVEEANIEPERVAEADMSRLGHLWYVTLGELSE 149
Query: 440 EIGWK 454
E+G++
Sbjct: 150 ELGYQ 154
>UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1;
Archaeoglobus fulgidus|Rep: 50S ribosomal protein L13P -
Archaeoglobus fulgidus
Length = 156
Score = 49.6 bits (113), Expect = 6e-05
Identities = 28/75 (37%), Positives = 43/75 (57%)
Frame = +3
Query: 33 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPA 212
VID GH+LGRL++ IAK LL G ++VVV E+ I+G+ + + + K +
Sbjct: 18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGDKY---MVFERYKEKYDRGSKE 74
Query: 213 RGPFHFRAPSKILWR 257
+GP+ R P +I R
Sbjct: 75 KGPYFPRHPERIFKR 89
Score = 38.7 bits (86), Expect = 0.12
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +2
Query: 257 TVRGMIPHKTERGKNALRRLRTYDGCP 337
TVRGM+P K+ RG++A RRLR + G P
Sbjct: 90 TVRGMLPWKSSRGRDAYRRLRVFMGVP 116
>UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1;
Arabidopsis thaliana|Rep: 60S L13 ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 61
Score = 49.2 bits (112), Expect = 8e-05
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +2
Query: 434 SHEIGWKYRDVVRKLEDKRKGKAVKELPMKRNLRGSPRMLVRRCRKATTPFTTIIQSYGY 613
+HE+GW+Y+ +V KLE+KRK K K+ R + + + T + +++ YGY
Sbjct: 1 AHEVGWQYQGIVEKLEEKRKVKGTAYYTKKKAEMKLKRQAIEKAKAKTAVYDKVLEQYGY 60
>UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropyrum
pernix|Rep: 50S ribosomal protein L13P - Aeropyrum
pernix
Length = 155
Score = 48.8 bits (111), Expect = 1e-04
Identities = 23/48 (47%), Positives = 35/48 (72%)
Frame = +3
Query: 6 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGN 149
+ G + IV+DG G ++GRLA+V+AK+LL G +V VV E+I +SG+
Sbjct: 3 LAGGEAREIVVDGSGMIMGRLASVVAKLLLAGWRVNVVNAEKIVLSGD 50
Score = 39.9 bits (89), Expect = 0.050
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +2
Query: 260 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 439
VRGM+P RG+ AL RLR Y G P D + +Y +G ++
Sbjct: 89 VRGMLPKNKARGRRALARLRVYVGVP---DELKGREFVRFPEADASRLSSHYIELGAVAR 145
Query: 440 EIGWK 454
++GWK
Sbjct: 146 QLGWK 150
>UniRef50_Q53K43 Cluster: Retrotransposon protein, putative,
unclassified; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Retrotransposon protein, putative,
unclassified - Oryza sativa subsp. japonica (Rice)
Length = 512
Score = 47.6 bits (108), Expect = 2e-04
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +2
Query: 290 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 442
RG+ AL RL+ Y+G PPP+D L+PG YC +G+LS E
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKE 59
>UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5;
Thermoproteaceae|Rep: 50S ribosomal protein L13P -
Pyrobaculum aerophilum
Length = 187
Score = 46.4 bits (105), Expect = 6e-04
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Frame = +3
Query: 30 IVIDGRGHLLGRLAAVIAKVLLE--GNKVVVVRCEQINISGNFFRNKLKLMSFLRK---- 191
+++D GH+ GRLA IAK LLE ++VVV E++ I+G+ K+ + F RK
Sbjct: 19 VIVDAEGHVAGRLATYIAKALLERPNLRIVVVNAEKLVITGD---EKMVIEWFKRKISEW 75
Query: 192 RCNVNPAR-GPFHFRAPSKILWRL 260
R + NP + GP R P ++ R+
Sbjct: 76 RTHYNPEKAGPKVPRRPDRVFKRI 99
Score = 36.7 bits (81), Expect = 0.47
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +2
Query: 260 VRGMIPHKTERGKNALRRLRTYDGCP 337
VRGM+P K+E G++AL+RLR Y P
Sbjct: 100 VRGMLPKKSETGRSALKRLRVYMSIP 125
>UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L13P -
Picrophilus torridus
Length = 138
Score = 42.7 bits (96), Expect = 0.007
Identities = 23/76 (30%), Positives = 40/76 (52%)
Frame = +3
Query: 30 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 209
I ID H+ GRL++ +AK LL G + +V ++ I+G R + + F R +
Sbjct: 2 IYIDASNHIYGRLSSYVAKKLLNGESITIVNASKVVITG---RKEFIIDKFNNLRNTGSI 58
Query: 210 ARGPFHFRAPSKILWR 257
+GP++ + +IL R
Sbjct: 59 RKGPYYPKTADRILKR 74
>UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11;
Euryarchaeota|Rep: 50S ribosomal protein L13P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 140
Score = 42.7 bits (96), Expect = 0.007
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +3
Query: 33 VIDGRGHLLGRLAAVIAKVLLEGN-KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 209
VID +G +LGRLA+ +AK LL G+ KV ++ E+ ISG+ L + R
Sbjct: 3 VIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGS---RAATLREYRETRDRGAT 59
Query: 210 ARGPFHFRAPSKILWR 257
GP+ + P +IL R
Sbjct: 60 EFGPYFPKRPDRILKR 75
Score = 40.3 bits (90), Expect = 0.038
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = +2
Query: 257 TVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLS 436
T+RGM+P+K RG++A+ RL+ Y G P++ L Y +G +S
Sbjct: 76 TIRGMLPYKRARGRDAMSRLKVYVGV--PYELKGAETTTIADADMRLLSSNKYVELGEVS 133
Query: 437 HEIGWKY 457
++G K+
Sbjct: 134 QKMGSKF 140
>UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein L13 -
Halorubrum lacusprofundi ATCC 49239
Length = 149
Score = 42.3 bits (95), Expect = 0.009
Identities = 23/76 (30%), Positives = 41/76 (53%)
Frame = +3
Query: 30 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 209
+V+D R +LGR+++ +A+ +L+G V VV E+ I+G N+ M R +
Sbjct: 10 VVVDARDCILGRVSSKVAQRVLDGETVAVVNAERAVITG----NEEATMETYHTRAELGS 65
Query: 210 ARGPFHFRAPSKILWR 257
GP++ + P +I R
Sbjct: 66 DSGPYYPKRPDRIFKR 81
Score = 35.5 bits (78), Expect = 1.1
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +2
Query: 260 VRGMIPHKTERGKNALRRLRTYDGCP 337
+RGM+P+KTE G+ AL +R Y G P
Sbjct: 83 IRGMLPYKTEDGREALSNVRVYVGNP 108
>UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3;
Sulfolobaceae|Rep: 50S ribosomal protein L13P -
Sulfolobus solfataricus
Length = 149
Score = 42.3 bits (95), Expect = 0.009
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +3
Query: 9 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLR 188
T + ++I+ G +LGR+A+ + ++L EG KV++V E+ ISG R L
Sbjct: 3 TQVQEQVVIINAEGQILGRMASNVVRLLKEGKKVIIVNGEKAVISGEKNRVIESYKLLLT 62
Query: 189 KRCNVNPAR-GPFHFRAPSKILWR 257
+ NP R G R+P I+ R
Sbjct: 63 VKTLFNPYRNGIRRPRSPINIVKR 86
>UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6;
Methanococcales|Rep: 50S ribosomal protein L13P -
Methanococcus maripaludis
Length = 137
Score = 41.5 bits (93), Expect = 0.016
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +3
Query: 30 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 209
+V++ ++GRLA+ +AK+ L G ++ VV E+ ++GN K + ++ NP
Sbjct: 2 VVVNAENAVVGRLASYVAKLALSGEEITVVNAEKAIMTGNKEYIFQKYVQLRTRKSISNP 61
Query: 210 AR-GPFHFRAPSKILWRL 260
+ GP + R P I+ R+
Sbjct: 62 KKMGPKYPRRPDDIVRRV 79
>UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured
organism HF70_19B12|Rep: Ribosomal protein L13P -
uncultured organism HF70_19B12
Length = 161
Score = 38.7 bits (86), Expect = 0.12
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Frame = +3
Query: 30 IVIDGRGHLLGRLAAVIAKVLL----EGN--KVVVVRCEQINISGNFFRNKLKLMSFLRK 191
+V D +LGRLA+ IAK LL EG+ +V+++ E ++G ++++ L + RK
Sbjct: 7 LVFDAHDKVLGRLASHIAKTLLVTRREGDPKRVIIINAEMAIVTGP--KDRI-LADYDRK 63
Query: 192 RCNVNPARGPFHFRAPSKILWR 257
+P +GPF R P IL R
Sbjct: 64 YKLNHPRKGPFFPRMPDMILKR 85
>UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4;
Thermoprotei|Rep: 50S ribosomal protein L13P -
Sulfolobus acidocaldarius
Length = 148
Score = 38.3 bits (85), Expect = 0.15
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +3
Query: 30 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISG 146
+++D +LGR++ IAK+L G KV VV E+ ISG
Sbjct: 8 VIVDATNQILGRMSTHIAKLLKSGKKVYVVNAEKAIISG 46
>UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4;
Halobacteriaceae|Rep: 50S ribosomal protein L13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 145
Score = 38.3 bits (85), Expect = 0.15
Identities = 21/76 (27%), Positives = 41/76 (53%)
Frame = +3
Query: 30 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 209
+++D R ++GR+A+ +A+ L+G V VV E+ I+G + +++ KR ++
Sbjct: 10 VIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITG----REEQIVEKYEKRVDIGN 65
Query: 210 ARGPFHFRAPSKILWR 257
G F+ + P I R
Sbjct: 66 DNGYFYPKRPDGIFKR 81
Score = 37.1 bits (82), Expect = 0.35
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 257 TVRGMIPHKTERGKNALRRLRTYDGCP 337
T+RGM+PHK +RG+ A +R Y G P
Sbjct: 82 TIRGMLPHKKQRGREAFESVRVYLGNP 108
>UniRef50_Q85FU2 Cluster: 50S ribosomal protein L13; n=1;
Cyanidioschyzon merolae|Rep: 50S ribosomal protein L13 -
Cyanidioschyzon merolae (Red alga)
Length = 98
Score = 35.1 bits (77), Expect = 1.4
Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Frame = +3
Query: 30 IVIDGRGHLLGRLAAVIAKVLLEGNK--VVVVRCEQINISGNFFRNK 164
++I+ + +LGRLA+ + K LL + + +V+ QI ++GN ++NK
Sbjct: 1 MLINAKDEILGRLASRVVKTLLTQSVTCIEIVQANQIQVTGNKYKNK 47
>UniRef50_Q4QG46 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 1445
Score = 35.1 bits (77), Expect = 1.4
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = -1
Query: 161 VPKEVARDVDLFAANHNN-----FVPFEKDLGDDCRQTAQQMTTAIDHYGLI 21
VP ++ R+ HNN FVPF ++ +D QT QQ+ +A+ H GL+
Sbjct: 271 VPADMNRNATSNMKGHNNGDPGDFVPFAREEKEDPIQTTQQLYSAVCHAGLV 322
>UniRef50_A5Z5I7 Cluster: Putative uncharacterized protein; n=1;
Eubacterium ventriosum ATCC 27560|Rep: Putative
uncharacterized protein - Eubacterium ventriosum ATCC
27560
Length = 106
Score = 33.9 bits (74), Expect = 3.3
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -2
Query: 232 LKWKGPRAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTTTTLFPSRR 89
L+W+ R+G + + + +S S F+KK+P + SQ T+ P RR
Sbjct: 23 LEWRACRSGESPYKFQSLSVSRSKFIKKVPSGRVISQSTSAFWLPFRR 70
>UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L13P -
Nanoarchaeum equitans
Length = 162
Score = 33.9 bits (74), Expect = 3.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 260 VRGMIPHKTERGKNALRRLRTYDGCP 337
+RGM+P KT RG+ L+ ++ Y G P
Sbjct: 81 IRGMLPRKTARGRELLKNVKVYIGVP 106
>UniRef50_Q60TB9 Cluster: Putative uncharacterized protein CBG20539;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG20539 - Caenorhabditis
briggsae
Length = 668
Score = 32.7 bits (71), Expect = 7.6
Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Frame = -1
Query: 485 CLQAYEQHHGISIQFHGT-VCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHHM--YV 315
CL Y HHG Q HGT HD + H E GTHH Y
Sbjct: 450 CLAYYGTHHGTHDQSHGTHGGYHDPAHHGTHHATHYESHGTHGGYHDPAHHGTHHATHYE 509
Query: 314 AS*EHSCHALFCVGSY 267
+ H H+L G++
Sbjct: 510 SHGTHGHHSLAYYGTH 525
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,564,893
Number of Sequences: 1657284
Number of extensions: 13523205
Number of successful extensions: 34590
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 33557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34571
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -