Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00566
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0071 - 522920-523063,524125-524212,524289-524677 108 4e-24
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 107 7e-24
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 79 4e-15
11_04_0056 + 12942802-12942920,12943022-12943115 58 4e-09
04_03_0232 - 13049649-13052807 31 0.77
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622 29 3.1
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 28 5.4
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 28 7.1
07_01_1106 - 10187609-10190041,10190292-10191932 27 9.4
04_03_0148 + 11869929-11869968,11870000-11870421 27 9.4
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 108 bits (259), Expect = 4e-24
Identities = 46/83 (55%), Positives = 61/83 (73%)
Frame = +3
Query: 9 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLR 188
+G + +V+D R H+LGRLA+++AK LL G +VVVVRCE++ ISG R K+K + FLR
Sbjct: 5 SGLCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLR 64
Query: 189 KRCNVNPARGPFHFRAPSKILWR 257
KR N P+ GP HFRAPS+I WR
Sbjct: 65 KRMNTKPSHGPIHFRAPSRIFWR 87
Score = 97.1 bits (231), Expect = 1e-20
Identities = 42/82 (51%), Positives = 53/82 (64%)
Frame = +2
Query: 257 TVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLS 436
TVRGMIPHKT RG+ AL L+ +DG PPP+D L+PG YC +G+LS
Sbjct: 88 TVRGMIPHKTPRGEAALANLKAFDGVPPPYDRTKRMVVPDALKVLRLQPGHKYCLLGQLS 147
Query: 437 HEIGWKYRDVVRKLEDKRKGKA 502
E+GW Y D +R+LE+KRK KA
Sbjct: 148 KEVGWNYHDTIRELEEKRKEKA 169
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 107 bits (257), Expect = 7e-24
Identities = 47/83 (56%), Positives = 61/83 (73%)
Frame = +3
Query: 9 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLR 188
+G +V+D R H+LGRLA++IAK LL G +VVVVRCE+I +SG R K+K + FLR
Sbjct: 5 SGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLR 64
Query: 189 KRCNVNPARGPFHFRAPSKILWR 257
KR N P+ GP HFR+P+KILWR
Sbjct: 65 KRMNTKPSHGPIHFRSPAKILWR 87
Score = 99.1 bits (236), Expect = 3e-21
Identities = 43/82 (52%), Positives = 55/82 (67%)
Frame = +2
Query: 257 TVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLS 436
TVRGMIPHKT+RG+ AL RL+ Y+G PPP+D L+PG YC +G+LS
Sbjct: 88 TVRGMIPHKTKRGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLS 147
Query: 437 HEIGWKYRDVVRKLEDKRKGKA 502
E+GW Y D +R+LE+KRK KA
Sbjct: 148 KEVGWNYYDTIRELEEKRKEKA 169
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 78.6 bits (185), Expect = 4e-15
Identities = 34/72 (47%), Positives = 44/72 (61%)
Frame = +2
Query: 257 TVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLS 436
TVRGMIPHKT+RG+ AL RL+ Y+ PP+D L+PG YC +G+LS
Sbjct: 22 TVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLS 81
Query: 437 HEIGWKYRDVVR 472
E+GW Y D +R
Sbjct: 82 KEVGWNYYDTIR 93
Score = 37.9 bits (84), Expect = 0.007
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +3
Query: 198 NVNPARGPFHFRAPSKILWR 257
N P+ GP HFR+P+KILWR
Sbjct: 2 NTKPSHGPIHFRSPAKILWR 21
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 58.4 bits (135), Expect = 4e-09
Identities = 24/56 (42%), Positives = 32/56 (57%)
Frame = +2
Query: 290 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKY 457
RG+ AL RL+ Y+G PPP+D L+PG YC +G+LS E+GW Y
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNY 64
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 31.1 bits (67), Expect = 0.77
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 500 PCPSSCLQAYEQHHGISIQFHGTVCLH 420
PCPS+CL+ Y H IS+Q LH
Sbjct: 763 PCPSNCLKPYSAHCYISVQDEMQTNLH 789
>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
Length = 501
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 419 HVGRLSHEIGWKYRDVVRKLEDKRKGKAVKELPM-KRNLRGSPRMLVR 559
H G E G +VVR L D +GKAV+ L + R LR P L R
Sbjct: 165 HGGGGEEEAGVVDDEVVRVLRDAEEGKAVERLLLADRQLRHLPEQLGR 212
>07_03_0860 +
22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 613 VSIGLDDGSEWCCRLPTPSHQHPW 542
V +G GS+WCC P PW
Sbjct: 397 VLLGSAGGSKWCCHSVDPDVLEPW 420
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 69 AAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMS 179
A A ++ + VVVV CE+ I+G N +KL+S
Sbjct: 2515 AIAFAASAIQNSSVVVVTCEREVITGGHADNSVKLIS 2551
>07_01_1106 - 10187609-10190041,10190292-10191932
Length = 1357
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 217 PRAGFTLHLLRRNDISLSLFLKKLPEMLIC 128
P G +LH+L ++S L+ LP+ L+C
Sbjct: 375 PSLGSSLHMLSALNLSCCYSLRALPDSLVC 404
>04_03_0148 + 11869929-11869968,11870000-11870421
Length = 153
Score = 27.5 bits (58), Expect = 9.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 37 SMAVVICWAVWRQSSPRSF 93
S+ ++ICW VW++ + R F
Sbjct: 99 SLVLLICWMVWKERNARVF 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,543,900
Number of Sequences: 37544
Number of extensions: 398108
Number of successful extensions: 1040
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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