Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00566
(635 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85) 31 0.78
SB_59190| Best HMM Match : rve (HMM E-Value=6e-18) 30 1.4
SB_51200| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_51018| Best HMM Match : RVT_1 (HMM E-Value=5.8e-17) 30 1.4
SB_23218| Best HMM Match : zf-CCHC (HMM E-Value=0.00066) 30 1.4
SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17) 30 1.4
SB_3903| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17) 30 1.4
SB_50204| Best HMM Match : rve (HMM E-Value=6.6e-22) 30 1.4
SB_47235| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17) 30 1.4
SB_42289| Best HMM Match : RVT_1 (HMM E-Value=5.2e-17) 30 1.4
SB_34611| Best HMM Match : rve (HMM E-Value=6.6e-22) 30 1.4
SB_27267| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17) 30 1.4
SB_11383| Best HMM Match : rve (HMM E-Value=2.3e-18) 30 1.4
SB_8937| Best HMM Match : RVP (HMM E-Value=0.029) 30 1.4
SB_46473| Best HMM Match : RVP (HMM E-Value=0.029) 29 3.2
SB_45755| Best HMM Match : GPW_gp25 (HMM E-Value=0.47) 28 5.5
SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0) 28 5.5
SB_40065| Best HMM Match : ABC_tran (HMM E-Value=0.0055) 28 5.5
SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24) 28 7.3
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_28525| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34) 28 7.3
SB_32302| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_5125| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_29974| Best HMM Match : RVT_1 (HMM E-Value=3e-17) 27 9.7
>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 44.8 bits (101), Expect = 6e-05
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +2
Query: 269 MIPHKTERGKNALRRLRTYDGCPPPFD 349
MIPHKT++G A+ R++ +DG PPP+D
Sbjct: 1 MIPHKTKKGTEAMNRMKVFDGVPPPYD 27
>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
Length = 1459
Score = 31.1 bits (67), Expect = 0.78
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 37 SMAVVICWAVWRQSSPRSFSKGTKLLWFAANKSTSLATSLG 159
SM+V +C ++W + P F +L+W+ N S++ SLG
Sbjct: 265 SMSVSLCQSIWYHTHPSVFVSLGQLIWY--NTHPSVSVSLG 303
>SB_59190| Best HMM Match : rve (HMM E-Value=6e-18)
Length = 660
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 482 DKRKGKAVKELPMKRNLR--GSPRMLVRRCRKATTPFTTIIQ 601
DKRKGK K P K N+R PR L R ++ P T+ Q
Sbjct: 255 DKRKGKEKKSPPTKDNIRICIDPRDLNRALKRPHYPMATVEQ 296
>SB_51200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 938
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 482 DKRKGKAVKELPMKRNLR--GSPRMLVRRCRKATTPFTTIIQ 601
DKRKGK K P K N+R PR L R ++ P T+ Q
Sbjct: 155 DKRKGKEKKSPPTKDNIRICIDPRDLNRALKRPHYPMATVEQ 196
>SB_51018| Best HMM Match : RVT_1 (HMM E-Value=5.8e-17)
Length = 635
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 482 DKRKGKAVKELPMKRNLR--GSPRMLVRRCRKATTPFTTIIQ 601
DKRKGK K P K N+R PR L R ++ P T+ Q
Sbjct: 203 DKRKGKEKKSPPTKDNIRICIDPRDLNRALKRPHYPMATVEQ 244
>SB_23218| Best HMM Match : zf-CCHC (HMM E-Value=0.00066)
Length = 557
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 482 DKRKGKAVKELPMKRNLR--GSPRMLVRRCRKATTPFTTIIQ 601
DKRKGK K P K N+R PR L R ++ P T+ Q
Sbjct: 476 DKRKGKEKKSPPTKDNIRICIDPRDLNRALKRPHYPMATVEQ 517
>SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)
Length = 1432
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 482 DKRKGKAVKELPMKRNLR--GSPRMLVRRCRKATTPFTTIIQ 601
DKRKGK K P K N+R PR L R ++ P T+ Q
Sbjct: 371 DKRKGKEKKSPPTKDNIRICIDPRDLNRALKRPHYPMATVEQ 412
>SB_3903| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)
Length = 609
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 482 DKRKGKAVKELPMKRNLR--GSPRMLVRRCRKATTPFTTIIQ 601
DKRKGK K P K N+R PR L R ++ P T+ Q
Sbjct: 393 DKRKGKEKKSPPTKDNIRICIDPRDLNRALKRPHYPMATVEQ 434
>SB_50204| Best HMM Match : rve (HMM E-Value=6.6e-22)
Length = 800
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 482 DKRKGKAVKELPMKRNLR--GSPRMLVRRCRKATTPFTTIIQ 601
DKRKGK K P K N+R PR L R ++ P T+ Q
Sbjct: 203 DKRKGKEKKSPPTKDNIRICIDPRDLNRALKRPHYPMATVEQ 244
>SB_47235| Best HMM Match : RVT_1 (HMM E-Value=4.5e-17)
Length = 378
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 482 DKRKGKAVKELPMKRNLR--GSPRMLVRRCRKATTPFTTIIQ 601
DKRKGK K P K N+R PR L R ++ P T+ Q
Sbjct: 24 DKRKGKEKKSPPTKDNIRICIDPRDLNRALKRPHYPMATVEQ 65
>SB_42289| Best HMM Match : RVT_1 (HMM E-Value=5.2e-17)
Length = 429
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 482 DKRKGKAVKELPMKRNLR--GSPRMLVRRCRKATTPFTTIIQ 601
DKRKGK K P K N+R PR L R ++ P T+ Q
Sbjct: 109 DKRKGKEKKSPPTKDNIRICIDPRDLNRALKRPHYPMATVEQ 150
>SB_34611| Best HMM Match : rve (HMM E-Value=6.6e-22)
Length = 875
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 482 DKRKGKAVKELPMKRNLR--GSPRMLVRRCRKATTPFTTIIQ 601
DKRKGK K P K N+R PR L R ++ P T+ Q
Sbjct: 24 DKRKGKEKKSPPTKDNIRICIDPRDLNRALKRPHYPMATVEQ 65
>SB_27267| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)
Length = 649
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 482 DKRKGKAVKELPMKRNLR--GSPRMLVRRCRKATTPFTTIIQ 601
DKRKGK K P K N+R PR L R ++ P T+ Q
Sbjct: 427 DKRKGKEKKSPPTKDNIRICIDPRDLNRALKRPHYPMATVEQ 468
>SB_11383| Best HMM Match : rve (HMM E-Value=2.3e-18)
Length = 1003
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 482 DKRKGKAVKELPMKRNLR--GSPRMLVRRCRKATTPFTTIIQ 601
DKRKGK K P K N+R PR L R ++ P T+ Q
Sbjct: 239 DKRKGKEKKSPPTKDNIRICIDPRDLNRALKRPHYPMATVEQ 280
>SB_8937| Best HMM Match : RVP (HMM E-Value=0.029)
Length = 303
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 482 DKRKGKAVKELPMKRNLR--GSPRMLVRRCRKATTPFTTIIQ 601
DKRKGK K P K N+R PR L R ++ P T+ Q
Sbjct: 255 DKRKGKEKKSPPTKDNIRICIDPRDLNRALKRPHYPMVTVEQ 296
>SB_46473| Best HMM Match : RVP (HMM E-Value=0.029)
Length = 304
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 482 DKRKGKAVKELPMKRNLR--GSPRMLVRRCRKATTPFTTIIQ 601
DKRKGK K P K N+R PR L R ++ P T+ Q
Sbjct: 255 DKRKGKEKKSPPTKDNIRICIDPRDLNRAPQRPHYPMATVEQ 296
>SB_45755| Best HMM Match : GPW_gp25 (HMM E-Value=0.47)
Length = 624
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = +2
Query: 401 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKELPMKRNLRGSP 544
PG+ C VG+L + W + + R L + A P + +P
Sbjct: 535 PGKQLCLVGQLGYRGRWSFSVIDRPLHTRELAAAFTRTPAAKQRANNP 582
>SB_42005| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 621
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -2
Query: 253 HRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTTT 110
H + AL+W+G R FTL + + + LS + K + + C ++T
Sbjct: 530 HEVWYQALRWRGERVYFTLIMPWMSRVPLSQPIPKRSDRVSCGALSST 577
>SB_40065| Best HMM Match : ABC_tran (HMM E-Value=0.0055)
Length = 400
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 496 QGC*GVAYEKKLKRITKDAGEKVSEGDNTIHYHHPILWIQL 618
QGC + KL + K + + VS DN HYH LWI L
Sbjct: 134 QGC----HVAKLAQQPKGSSD-VSNQDNAEHYHWSALWIDL 169
>SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 27.9 bits (59), Expect = 7.3
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 12/57 (21%)
Frame = +3
Query: 33 VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFRNKL 167
+IDGR + GRLA I ++L G+ VVV+ + I +SG + NKL
Sbjct: 20 LIDGRDQICGRLAGYIGQILQGKTKPIYHHAEDVGDYVVVINTKHIVLSGTKWDNKL 76
>SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)
Length = 676
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 425 LHDSNYGQVSDRRHVEQQALQHVDGYQREEGTH-HMY 318
+H S + +V ++H+E +A H Y R + H H+Y
Sbjct: 319 IHVSVFRRVLHQKHIEVEAYNHPHVYSRVKSNHPHVY 355
>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2982
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = -1
Query: 275 GSYLLQSP*NLRWSSKMERSTSRIHVAPL 189
GS + Q+P L W++++ RST ++++PL
Sbjct: 1713 GSLMEQNP-ALEWNTQLWRSTQEVYISPL 1740
>SB_28525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 467
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = -1
Query: 275 GSYLLQSP*NLRWSSKMERSTSRIHVAPL 189
GS + Q+P L W++++ RST ++++PL
Sbjct: 385 GSLMEQNP-ALEWNTQLWRSTQEVYISPL 412
>SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)
Length = 225
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -2
Query: 214 RAGFTLHLLRRNDISLSLFLKKLPEMLICSQRTTTTL 104
R G+ + + ++ ++ LFL PE++ R TT +
Sbjct: 131 RGGYNCSVCKTSEAAMELFLNNQPEVIFIDMRDTTPI 167
>SB_32302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -1
Query: 296 CHALFCVGSYLLQSP*NLRWSSKMERSTS 210
CH+++ GS +Q N++W+ +E + S
Sbjct: 141 CHSMYIFGSMGMQKKANIKWNKFLEETRS 169
>SB_5125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 310 PKSILATLCFVWDHTSYSLHRI 245
P S ++ C VW TS SLHRI
Sbjct: 131 PTSKISRGCLVWQITSRSLHRI 152
>SB_29974| Best HMM Match : RVT_1 (HMM E-Value=3e-17)
Length = 890
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +2
Query: 482 DKRKGKAVKELPMKRNLR--GSPRMLVRRCRKATTPFTTIIQ 601
DKRK K K P K N+R PR L R ++ P T+ Q
Sbjct: 203 DKRKDKEKKSPPTKDNIRICIDPRDLNRALKRPHYPMATVEQ 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,950,556
Number of Sequences: 59808
Number of extensions: 448080
Number of successful extensions: 1842
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1841
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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