Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00566
(635 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical pr... 134 4e-32
U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal p... 134 4e-32
U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical ... 29 2.1
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 29 2.8
AC024842-4|AAY43991.1| 703|Caenorhabditis elegans Hypothetical ... 29 3.7
AC024842-3|AAP13732.1| 1111|Caenorhabditis elegans Hypothetical ... 29 3.7
AC024842-2|ABA00150.1| 604|Caenorhabditis elegans Hypothetical ... 29 3.7
AC024842-1|AAF59622.4| 1127|Caenorhabditis elegans Hypothetical ... 29 3.7
U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical p... 27 8.5
>Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical
protein M01F1.2 protein.
Length = 202
Score = 134 bits (325), Expect = 4e-32
Identities = 59/82 (71%), Positives = 72/82 (87%)
Frame = +3
Query: 12 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 191
G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 192 RCNVNPARGPFHFRAPSKILWR 257
RCN+NPARG FH+RAP KI WR
Sbjct: 62 RCNINPARGAFHYRAPGKIFWR 83
Score = 97.1 bits (231), Expect = 9e-21
Identities = 48/120 (40%), Positives = 64/120 (53%)
Frame = +2
Query: 257 TVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLS 436
TVRGM+PHKT RG AL+ LR Y+G P + F L+P R +C VGRLS
Sbjct: 84 TVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLS 142
Query: 437 HEIGWKYRDVVRKLEDKRKGKAVKELPMKRNLRGSPRMLVRRCRKATTPFTTIIQSYGYN 616
HE+GW+++DVV KLE KRK K K+ + + + II++ GYN
Sbjct: 143 HEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALGYN 202
>U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal
protein L13A protein.
Length = 202
Score = 134 bits (325), Expect = 4e-32
Identities = 59/82 (71%), Positives = 72/82 (87%)
Frame = +3
Query: 12 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 191
G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 192 RCNVNPARGPFHFRAPSKILWR 257
RCN+NPARG FH+RAP KI WR
Sbjct: 62 RCNINPARGAFHYRAPGKIFWR 83
Score = 97.1 bits (231), Expect = 9e-21
Identities = 48/120 (40%), Positives = 64/120 (53%)
Frame = +2
Query: 257 TVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLS 436
TVRGM+PHKT RG AL+ LR Y+G P + F L+P R +C VGRLS
Sbjct: 84 TVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLS 142
Query: 437 HEIGWKYRDVVRKLEDKRKGKAVKELPMKRNLRGSPRMLVRRCRKATTPFTTIIQSYGYN 616
HE+GW+++DVV KLE KRK K K+ + + + II++ GYN
Sbjct: 143 HEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALGYN 202
>U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical
protein C10G8.3 protein.
Length = 189
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 500 PCPSSCLQAYEQHHGISIQFHGTVCLHD 417
PCP E+ HGI++Q G CLH+
Sbjct: 143 PCPIGQTIVREKIHGITVQLLGKRCLHN 170
>AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical
protein F13C5.1 protein.
Length = 437
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 497 CPSSCLQAYEQHHGISIQFHGTVCLHDSNY 408
C S L +E HHGI + G + L D++Y
Sbjct: 329 CSSGSLTHFESHHGIKLLTIGVLPLDDNSY 358
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/56 (28%), Positives = 20/56 (35%)
Frame = -1
Query: 464 HHGISIQFHGTVCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*EHS 297
HH H H +G V R H E H + E GTHH + H+
Sbjct: 381 HHEHKEGEHHEHAAHHDEHG-VHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHA 435
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = -1
Query: 476 AYEQHHGISIQFHGTVCLHDS--NYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*E 303
A+ HHG HG H S ++G + H H G+ G HH + S
Sbjct: 537 AHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHH--GHHGSHGVHHGHHESHG 594
Query: 302 HSCHA 288
H HA
Sbjct: 595 HGHHA 599
>AC024842-4|AAY43991.1| 703|Caenorhabditis elegans Hypothetical
protein Y59H11AR.2c protein.
Length = 703
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 506 KELPMKRNLRGSPRMLVRRCRKATTP--FTTIIQSY 607
+E MK +GSP M++ CR T P F I++ Y
Sbjct: 197 EEDSMKAYCKGSPEMIMSLCRPETVPENFHDIVEEY 232
>AC024842-3|AAP13732.1| 1111|Caenorhabditis elegans Hypothetical
protein Y59H11AR.2b protein.
Length = 1111
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 506 KELPMKRNLRGSPRMLVRRCRKATTP--FTTIIQSY 607
+E MK +GSP M++ CR T P F I++ Y
Sbjct: 605 EEDSMKAYCKGSPEMIMSLCRPETVPENFHDIVEEY 640
>AC024842-2|ABA00150.1| 604|Caenorhabditis elegans Hypothetical
protein Y59H11AR.2d protein.
Length = 604
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 506 KELPMKRNLRGSPRMLVRRCRKATTP--FTTIIQSY 607
+E MK +GSP M++ CR T P F I++ Y
Sbjct: 98 EEDSMKAYCKGSPEMIMSLCRPETVPENFHDIVEEY 133
>AC024842-1|AAF59622.4| 1127|Caenorhabditis elegans Hypothetical
protein Y59H11AR.2a protein.
Length = 1127
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 506 KELPMKRNLRGSPRMLVRRCRKATTP--FTTIIQSY 607
+E MK +GSP M++ CR T P F I++ Y
Sbjct: 621 EEDSMKAYCKGSPEMIMSLCRPETVPENFHDIVEEY 656
>U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical
protein C50E3.2 protein.
Length = 168
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 475 LTNNITVFPSNFMGQSAYMTVITARFQTE 389
L NNI VFPSN + +++ MT+ R +T+
Sbjct: 27 LENNILVFPSN-ISEASGMTLFHGRIETK 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,162,600
Number of Sequences: 27780
Number of extensions: 321801
Number of successful extensions: 881
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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