Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00565
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    33   0.035
SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr 3...    29   0.76 
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    28   1.8  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    27   3.1  
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc...    27   4.1  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   7.1  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   9.4  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    25   9.4  

>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 33.5 bits (73), Expect = 0.035
 Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +2

Query: 173 LLIYSAHDLTIGNILNSLDMYDGKCP--ASHL 262
           L +Y AHD+TI  IL SLD +D + P   SHL
Sbjct: 323 LALYGAHDVTIAAILASLDAFDYRWPPFTSHL 354


>SPCC645.02 |||conserved protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 188

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 414 IDGLEAFKWTLRTTARYI*NAGFYNFSRVP 325
           I+G++AF  T+R   R I +A F  FS++P
Sbjct: 5   IEGIQAFCQTIRNPRRIIPHATFPTFSQIP 34


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
 Frame = -3

Query: 755 HSIFGN--WSNFGPRQQSLNQTVPNILMVARKCPHIENPFSHDSSGRR*RHIYLTIVCRG 582
           H +F +  W +    Q  L ++ PN  ++   CP+++        G +  +  +  +  G
Sbjct: 94  HFMFSHKIWEDLSLPQNELLESGPNRNLLFEPCPYLKEVMPVVEKGIKTNNARVLDIGCG 153

Query: 581 LILDLVYL-FRPVHKKYFMSHVDSSKSPIPTMKDI 480
              DL ++ FR   K + +S +D+ K  I    ++
Sbjct: 154 SGRDLAWICFRESGKHWMVSALDAEKRAIQRFSEL 188


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 228 ICTTENVPLHIYDL 269
           IC   NVP+HIYD+
Sbjct: 303 ICKMRNVPIHIYDI 316


>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 657 MWTLASYHQNVWDCLIERLLPGSEITPIAKDAM 755
           +W +   H N+ DC +    P S+  P   DA+
Sbjct: 119 IWEIIDRHINLSDCSVYSYTPDSDSDPYGDDAL 151


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -3

Query: 545 HKKYFMSHVDSSKSPIPTMKDITRIAT---N*DCLHS*SHLTEIRLS*MVLK 399
           H+KY ++  D SKS    +K++ + +    N   L S  HLTE   S  +LK
Sbjct: 562 HEKYSLAQRDVSKSKNKELKELFKYSMGIHNAGMLRSDRHLTERLFSMGILK 613


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +1

Query: 397 RFKTIYDNLISVKWDYECRQSQFVAILVMSFIVGMGLLLL 516
           R  +IYD L    W +  +   F+ +L +++ + + LL++
Sbjct: 131 RLISIYDFLTYSSWSFSVKGGSFLLLLPLAYNITLFLLVI 170


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -2

Query: 540 KVLYESCR**QKSHSNYERHNKNRHELRLPAFI-VPFN 430
           ++L E+ R  +K  S+    ++NR+ +RLP+F  VP N
Sbjct: 79  EILLENVRTVRKQRSSLYHISENRNLVRLPSFTDVPVN 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,384,662
Number of Sequences: 5004
Number of extensions: 71697
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)