Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00565
         (793 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33341| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_28159| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_39151| Best HMM Match : 7tm_1 (HMM E-Value=8e-07)                   28   10.0 

>SB_33341| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +2

Query: 71  LARLKVGPLMKIIVTSIQEVISNXXXXXXXXXXXLLIYSAHDLTIGNILNSLDMYDGKCP 250
           + +  VG  +  I+T + + I+            + +YS HD +I  +L +L ++D K P
Sbjct: 160 IIKASVGKFLDEIITRMNDKINGISPAQHK----MCLYSVHDTSISCLLTALGVFDNKWP 215


>SB_28159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 11  PEKMR-EPAGYSFKTETATPLLARLKVGPL 97
           PEK+R +P G S +  T  P+L R   GPL
Sbjct: 310 PEKLRRKPVGLSREPGTGNPVLRRTACGPL 339


>SB_39151| Best HMM Match : 7tm_1 (HMM E-Value=8e-07)
          Length = 269

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = -3

Query: 689 NILMVARKCPHIENPFSHDSSGRR*RHIYLTIVCRGLILDLVYLFRPVHKKYFMSHVDSS 510
           +I++V  K  H +NP  +    RR RH+++ ++ R     LVY     ++K  ++H  S 
Sbjct: 200 SIILVVSK--HAQNPLLYGCLNRRYRHVFVRLLRR-----LVYSEGRENRKIHVTHTHSR 252

Query: 509 KSPIPTMKD 483
            S +    D
Sbjct: 253 MSIVLATTD 261


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,838,059
Number of Sequences: 59808
Number of extensions: 512424
Number of successful extensions: 1028
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)