Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00565
         (793 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54750.1 68418.m06818 transport protein particle (TRAPP) comp...    31   1.2  
At1g31740.1 68414.m03894 beta-galactosidase, putative / lactase,...    28   6.2  

>At5g54750.1 68418.m06818 transport protein particle (TRAPP)
           component Bet3, putative similar to SP|P36149 Transport
           protein particle 22 kDa subunit (TRAPP 22 kDa subunit)
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF04051: Transport protein particle (TRAPP) component,
           Bet3
          Length = 186

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 623 GHCCHV-KKDSRYVDTCELPSKCLGLFD*EIVAGV 724
           G CC +  +D+  VD  ELP  C GL+   +++GV
Sbjct: 105 GTCCSIILEDNPLVDFVELPDTCQGLYYCNVLSGV 139


>At1g31740.1 68414.m03894 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase precursor
           [Brassica oleracea] SWISS-PROT:P49676
          Length = 786

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 453 PAFIVPFNGNQVVIDGLEAFKWTLRT 376
           P FI+  NG++ ++  L   KW+ +T
Sbjct: 586 PVFIIGRNGDETIVKDLSTHKWSYKT 611


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,406,453
Number of Sequences: 28952
Number of extensions: 364167
Number of successful extensions: 742
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)