Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00563
         (602 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   3.5  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   8.0  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   8.0  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 150 TLCHHARSNLPAHSPPGVKCLPEPIDIYH 236
           ++ H A ++LP H PP     P P+  +H
Sbjct: 149 SIFHAAATSLPLHYPP-----PPPVYTHH 172


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 470 YMSSIRVSSTYW 505
           YMS+I + S+YW
Sbjct: 390 YMSTIDLRSSYW 401


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 279 LTFNSTLSQTCTNFYKEIFATN 344
           LTFN  ++    + Y+EIF  N
Sbjct: 189 LTFNGAVNVDNIDLYEEIFNGN 210


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,864
Number of Sequences: 336
Number of extensions: 3042
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)