Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00562X
         (374 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4UAU0 Cluster: Putative uncharacterized protein; n=2; ...    32   3.0  
UniRef50_Q58839 Cluster: Flap structure-specific endonuclease; n...    32   3.0  
UniRef50_Q54NL5 Cluster: Putative uncharacterized protein; n=1; ...    31   5.2  
UniRef50_Q22PP7 Cluster: Protein kinase domain containing protei...    31   9.1  

>UniRef50_Q4UAU0 Cluster: Putative uncharacterized protein; n=2;
            Theileria|Rep: Putative uncharacterized protein -
            Theileria annulata
          Length = 1514

 Score = 32.3 bits (70), Expect = 3.0
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = -3

Query: 294  YTIFLSKNVCL*NMFLNALSTYLKVLFSQLQLKNLIVVKNWYKNYFLLSS 145
            Y  FLS  VCL  ++L+ L  YL+ + ++ +   +IV+ ++  +YF  SS
Sbjct: 973  YLFFLSTFVCLFLIYLSRLIPYLRNIPNKTKFMYIIVLYSFITSYFFNSS 1022


>UniRef50_Q58839 Cluster: Flap structure-specific endonuclease; n=6;
           Methanococcales|Rep: Flap structure-specific
           endonuclease - Methanococcus jannaschii
          Length = 326

 Score = 32.3 bits (70), Expect = 3.0
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 167 LYQFLTTIRFLS*S*ENNTFR*VERAFKNIFYKQTFLLKNIVYRYFVVLG 316
           LYQFLT+IR    S   N    +  A+  +FYK   LL+N +   +V  G
Sbjct: 32  LYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKTIHLLENDITPIWVFDG 81


>UniRef50_Q54NL5 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 913

 Score = 31.5 bits (68), Expect = 5.2
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
 Frame = -2

Query: 370 FQNIFL---LTNYKIDI--FKDKPQYNKITIYNIFK*KCLFIKYVFKR---SFYLPE 224
           F N +L   L+  K+D+  FK K  Y K +I+N+FK    F K +FK     F LPE
Sbjct: 103 FDNTYLPINLSRDKLDVKKFKKKRVYYKSSIFNVFKDDEEFFKNLFKNYKLYFQLPE 159


>UniRef50_Q22PP7 Cluster: Protein kinase domain containing protein;
            n=12; Tetrahymena thermophila SB210|Rep: Protein kinase
            domain containing protein - Tetrahymena thermophila SB210
          Length = 1725

 Score = 30.7 bits (66), Expect = 9.1
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 370  FQNIFLLTNYKIDIFKDKPQYNKITIYNIFK*KCLFIKYVFKRS 239
            FQ  +L+  Y   +FK K Q+    ++N+FK   LFI  V  +S
Sbjct: 1651 FQIFYLIYFYYYFLFKYKFQFKNFILFNLFKQFILFIIIVITKS 1694


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 314,503,136
Number of Sequences: 1657284
Number of extensions: 5301885
Number of successful extensions: 10198
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10197
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14019197511
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)