Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00562X
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    25   5.1  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   9.0  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    24   9.0  

>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 223 FQVGRKSV*KHIL*TNIFT*KYCISLFCCTGVYP*IYR 336
           FQVGRK   + +L  N  T    +  F C  ++P ++R
Sbjct: 48  FQVGRKITERLLLNRNRITETTDVMRFLCRELWPIVFR 85


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 373 SFQNIFLLTNYKIDIFKDKPQYNKITIYNIFK*KCLFIKYVFKRSFYLPESIIF 212
           SF  +F L+   I  F   P  + +  +  F   C+F+ ++F  S  L  +I+F
Sbjct: 132 SFSFLFFLSQIFIVYFSSFPILHFLFFF--FLCVCVFLSFLFSLSHLLSLAILF 183


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 361 IFLLTNYKIDIFKDK 317
           +F+ TNY +D+ K+K
Sbjct: 207 VFIFTNYSLDLSKEK 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,378,814
Number of Sequences: 5004
Number of extensions: 24448
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)