Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00560X
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    25   3.1  
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar...    25   3.1  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    24   7.2  
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       24   7.2  
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    24   9.5  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    24   9.5  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    24   9.5  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    24   9.5  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    24   9.5  

>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 232 GTHGARGYSSLLSILSAP*RDFKRWSLDVVKY 137
           GTH A G  + L +      DF +  LD VK+
Sbjct: 72  GTHAAEGMPNFLQLADLDLPDFNQTILDPVKH 103


>SPAC26H5.09c |||GFO/IDH/MocA family
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 309 WLVTPNLLTSLLYILYNHTLYVIITLGRTGHGVT 208
           W   PN    L+Y L +H +   ITL  T H VT
Sbjct: 167 WKDVPNPGCGLVYDLGSHLIDQAITLFGTPHSVT 200


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 335 NSCCVFHXCGWSLQTYSQAY 276
           NSCC  +  G+S+   +QAY
Sbjct: 867 NSCCNIYRLGYSMCMRAQAY 886


>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 363 EDPDIVKESELLLRIPSLWLVTPNLLTSLLYILYNHTL 250
           + P + KE+  +   P    V+ +LL+ L+YILY  ++
Sbjct: 10  KSPLLPKENPPVKAFPDNIQVSSSLLSFLIYILYTFSI 47


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +1

Query: 322 TQQEFRFLHYIWIL 363
           T++ F FLHY++I+
Sbjct: 418 TEESFLFLHYVYII 431


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
 Frame = -2

Query: 321 IPSLWLVTPNLLTSLLYILYNHTLYVI--ITLGRTGHGV--TVHSCLSSV-HPE 175
           IP + L+  +L+  +LYI +  T Y++  I LG   + +    HS + ++ HPE
Sbjct: 22  IPIIALLVLSLIFYILYICFGTTSYILSGIILGAYVNSLFHNNHSVILNIKHPE 75


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 323  VFHXCGWSLQTYSQAYFIYYTII 255
            +   CG+ L  +SQ Y+ Y++ +
Sbjct: 961  ILSECGFVLFNFSQPYYYYFSFL 983


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 76  IRNWVKKKEEKAVLDFNEYSYILQH 150
           I+ W++  ++K +L+F  +S   QH
Sbjct: 227 IKQWLQLSKQKNLLEFEFWSQAAQH 251


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -1

Query: 271 YIIQSYIVCYNNTGTHGA 218
           Y+I + I+ +NNTGT+G+
Sbjct: 276 YMIFNAILGWNNTGTYGS 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,624,982
Number of Sequences: 5004
Number of extensions: 31996
Number of successful extensions: 92
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)