Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00560X
         (391 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0614 + 30621495-30621670,30621817-30622036,30623848-306242...    27   4.0  
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907...    27   5.3  
06_03_1211 - 28448429-28449295,28449825-28449860,28451010-284511...    26   9.2  
03_04_0004 + 16234648-16234731,16235178-16235237,16235598-162356...    26   9.2  

>01_06_0614 +
           30621495-30621670,30621817-30622036,30623848-30624270,
           30624523-30624906,30624991-30625086,30625161-30625276,
           30625431-30625598,30625685-30625844,30625999-30626196,
           30626304-30626432,30626595-30626673,30627010-30627119
          Length = 752

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -2

Query: 288 LTSLLYILYNHTLYVIITLGRTGHGVTVHSCLSSVHPEEILRDGPWML*NITILVEIQDR 109
           LT      Y+H L++I+ +    HG     CL  +H     R   WM  ++ + + + +R
Sbjct: 364 LTGFNAFWYSHHLFIIVYIALIVHG----ECLYLIH--VWYRRTTWMYLSVPVCLYVGER 417

Query: 108 FFLFF 94
              FF
Sbjct: 418 ILRFF 422


>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
            23090795-23090889,23090967-23091080,23091674-23091803,
            23091931-23092052,23092889-23093007,23093946-23094034,
            23094072-23094245,23094310-23094616,23094726-23095180,
            23095334-23096315,23096381-23097396,23097757-23097792,
            23098065-23098130
          Length = 1359

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -2

Query: 366  EEDPDIVKESELLLRIPSLWLVTPNLLTSLLYILYNHTLYVIITLGR 226
            +EDP +    E  L + SLW+ TP++L        ++T  +II++GR
Sbjct: 1260 DEDPVL----EFSLEVYSLWIHTPDMLQREPLRRLHYTKCLIISVGR 1302


>06_03_1211 -
           28448429-28449295,28449825-28449860,28451010-28451135,
           28452861-28453400
          Length = 522

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 88  VKKKEEKAVLDFNEYSYILQHPGTI 162
           + K  E  + DFN YS I+  PGT+
Sbjct: 213 ILKAREHHLRDFNLYSTIIGQPGTV 237


>03_04_0004 +
           16234648-16234731,16235178-16235237,16235598-16235627,
           16235859-16235909,16235978-16236076,16236410-16236469,
           16236534-16236623,16237011-16237112,16237195-16237305,
           16237952-16238068,16238153-16238233,16239089-16239169,
           16239798-16239875,16239949-16240088,16240205-16240304,
           16240836-16240954,16241152-16241287,16241371-16241501,
           16242222-16242298,16242451-16242562,16242638-16242693,
           16243724-16243839,16245538-16245622,16245703-16245806,
           16246469-16246597,16246888-16246938
          Length = 799

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 104 SSFFFTQFLISWTPECDQLQVCRQCIRIHYNNIK 3
           S   F + LIS  P   Q+QVCR+C  + Y N K
Sbjct: 723 SMLIFERLLISSDPY--QVQVCRKCGLLGYYNHK 754


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,492,922
Number of Sequences: 37544
Number of extensions: 197665
Number of successful extensions: 511
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)